BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482793
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF3... 2338 0.0
> AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF3411)
| chr2:15856632-15858920 FORWARD LENGTH=1531
Length=1531
Score = 2338 bits (1266), Expect = 0.0
Identities = 1451/1537 (94%), Gaps = 25/1537 (2%)
Strand=Plus/Plus
Query 1 GGCCCTAATCACTCTTGCAGTCACCACTGT---C-TCCGTCTCTTCTTCTCCTTCGTT-G 55
|||||||||||||||||||||||||||||| | ||||||||| |||||||||| || |
Sbjct 4 GGCCCTAATCACTCTTGCAGTCACCACTGTCGCCGTCCGTCTCTCCTTCTCCTTC-TTAG 62
Query 56 GGACCATTCCTCCTCTTTCAGGCCAGATTCAAGAAGAGG-ACAATGGCAGGATGTGCAAT 114
||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||
Sbjct 63 GGACCATTCCTCCTCTTTCAGACCAGATTCTAGAAGAGGAAAAATGGCAGGATGTGCAAT 122
Query 115 GAATTTTCAGTTCTCGAGTGTTGTGAAAGTGAGAAACGAGATCTCTTCTTTAAGGATTTG 174
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 123 GAATCTTCAGTTCTCAAGTGTTGTGAAAGTGAGAAACGAGATCTCTTCTTTTGGGATTTG 182
Query 175 TAATCGAGACTTTGTATTTAGAGATTTGGCCAAGGCAATGAAAGTGCCTGTTTTGCGGAT 234
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 183 TAATCGAGACTTTGTATTTAGAGATTTAGCCAAGGCAATGAAAGTGCCTGTTTTGCGGAT 242
Query 235 TAGAGGTGCTTCAGGAAGGCAAAGGTCGAGGCTTTT-GATGGTTAATATGTCTCAATCTC 293
|||||||| |||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 243 TAGAGGTGGTTCAGGTAGGCAAAGGTCGAGGCTTTTCG-TGGTTAATATGTCTCAATCTC 301
Query 294 CTGTTGAACCGCAATCTGGT-G-TAT-CAGTTACCGAGC-AATCGAAAGGAGAAGGTGAT 349
| |||| || ||||||||| | | | | | ||| || | ||| |||||||||||||||
Sbjct 302 CCATTGAGCCACAATCTGGTGGTTTTGCGGCTACTGAACAAAT-TAAAGGAGAAGGTGAT 360
Query 350 GATAGTATCTTAGGGAAAGACAATGTTAGAAACTTGGGAACTGATCAGCTTGAGAATTTG 409
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AATAGTATCTTAGGGAAAGACAATGTTAGAAACTTAGGAACTGATCAGCTTGAGAATTTG 420
Query 410 GATCA-TGATGGTAATGTAGGGGATGGCTTTAATGGTAATGATGGTAATGGGGGCAGTGG 468
||| | |||||||||||| || ||||| |||||||||| ||||||||||||||| ||||
Sbjct 421 GAT-ATTGATGGTAATGTTGGAGATGGTTTTAATGGTAGTGATGGTAATGGGGGTGGTGG 479
Query 469 AGGAGGTGGAAATGGAGGAGAAGGTGATGGCGAAGGCGAAGATTACGAAGAAAAAGAGTT 528
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 480 AGGAGGTGGAAATGGAGGAGAAGGTGATGGTGAAGGTGAAGACTACGAAGAAAAAGAGTT 539
Query 529 TGGACCGATTTTGAAATTTGAAGAGGTCATGAAGGAGACTGAAGCTCGAGGAGCTACTCT 588
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TGGACCGATATTGAAATTTGAAGAGGTCATGAAGGAGACTGAAGCTAGAGGAGCTACTCT 599
Query 589 TCCATCTGATATGTTGGAAGCTGCTAAG-ACTTATGGGATCCGCAAAGTGCTTCTCCTTA 647
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 600 TCCATCTGATATGTTGGAAGCTGCTAAGAAC-TATGGGATCCGCAAAGTGCTTCTCCTTA 658
Query 648 GGTACTTGGATTTGCAGAGCTCAGCTGGGCTGCTTGGGTTTGCTATAAGATCATGGGCTA 707
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 659 GGTACTTGGATTTGCAGAGCTCAGCAGGGCTTCTTGGGTTTGCTATAAGATCATGGGCTA 718
Query 708 TGCTTCGAAACAGAATGTTGGCTGATCCATCTTTCCTCTTCAAAATAGGGGCTGAGATAG 767
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGCTTCGTAACAGAATGTTGGCTGATCCATCTTTCCTCTTCAAAATAGGGGCTGAGATAG 778
Query 768 TCATTGATTCTTGTTGTGCCACTGTTGCTGAAGTTCAAAAGAGAGGGAAGGATTTCTGGG 827
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 779 TCATTGATTCTTGCTGTGCCACTGTTGCTGAAGTTCAAAAGAGAGGGAAAGATTTCTGGG 838
Query 828 CGGAGTTTGAGTTGTATGTTGCTGATCTTTTAGTTGGAACTGTGGTTAACATTGCTCTGG 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGGAGTTTGAGTTGTATGTTGCTGATCTTTTAGTTGGAACTGTGGTTAACATTGCTCTGG 898
Query 888 TCGGTATGTTGGCGCCTTATGTTCGTTTTGGACAACCATCCGCATCACCTGGCTTCTTAG 947
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 TCGGTATGTTGGCGCCTTATGTTCGTTTTGGACAACCTTCCGCATCACCTGGCTTCTTAG 958
Query 948 GACGAATGGTTTTTGCTTATAATGCGCTTCCTAGCAGCGTGTTTGAAGCTGAAAGGCCAG 1007
|||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 959 GACGCATGGTTTTTGCATATAATGCGCTTCCTAGCAGTGTTTTTGAAGCTGAAAGGCCAG 1018
Query 1008 GATGTCGATTTTCCGCTCAACAGAGACTTGCTACATACTTCTACAAGGGTATAATGTATG 1067
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GATGTAGATTTTCCGCTCAACAGAGACTTGCTACATACTTCTACAAGGGTATAATGTATG 1078
Query 1068 GTGCAGTTGGATTTGGATGTGGCATCGTAGGTCAAGGCATCGCAAATCTTATCATGACTG 1127
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1079 GTGCAGTTGGATTTGGATGTGGCATTGTAGGTCAAGGCATTGCAAATCTTATCATGACTG 1138
Query 1128 CTAAACGAAACATAAATAAATCAGAAGAGAACATCCCGGTACCACCGCTAATCAAGAGTG 1187
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CCAAACGAAACATAAATAAATCAGAAGAGAACATCCCGGTACCACCGCTAATCAAGAGTG 1198
Query 1188 CAGCTCTCTGGGGTGTATTCTTGAGTGTTTCTTCGAATACTCGTTATCAGATCATCAATG 1247
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 CAGCTCTCTGGGGTGTATTCTTGAGTGTTTCTTCGAATACTCGTTATCAAATCATCAATG 1258
Query 1248 GTCTAGAGAGAGTGGTCGAAGCATCACCTTTCGCCAAGAAATTGCCTCCGGCGGCTATGG 1307
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1259 GTCTAGAAAGAGTGGTCGAAGCATCACCTTTTGCCAAGAAATTCCCTCCGGCGGCTATGG 1318
Query 1308 CCTTCACAGTTGGTGTACGGTTGGCCAATAACATCTACGGTGGTATGCAGTTTGTGGATT 1367
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1319 CCTTCACAGTTGGTGTACGGTTGGCCAATAACATCTACGGCGGAATGCAGTTTGTGGATT 1378
Query 1368 GGGCAAGATTGAGCGGTTGTCAGTGAAAACAACCAAAA-CTCTTCTTTGTGTGTCTTATT 1426
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1379 GGGCAAGATTGAGCGGTTGTCAGTGAAAACAACCAAAAACTCTTTTTTGTGTGTCTTATT 1438
Query 1427 TGATGAAACCATATAATGTTGTAGCCTACTCATTTCGATCTGTTTTACTACGTTTCCGTT 1486
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1439 TGATGAAACCATATGTTGTTGTAGCCTACTCATTTCTATCTGTTTTACTACATTTCCGTT 1498
Query 1487 GTTACTATAATATCCAATAATAAGAAATTTCAGCTCG 1523
|||| ||| || | ||||||||| ||||||||||
Sbjct 1499 GTTA-TATC-TA---A-TAATAAGAATTTTCAGCTCG 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5