BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482794
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37880.1 | Symbols: | Protein of unknown function, DUF617 |... 1504 0.0
> AT2G37880.1 | Symbols: | Protein of unknown function, DUF617
| chr2:15860633-15861618 FORWARD LENGTH=986
Length=986
Score = 1504 bits (814), Expect = 0.0
Identities = 903/945 (96%), Gaps = 9/945 (1%)
Strand=Plus/Plus
Query 25 AGAGAGAGAAAGAGAATAAAGAAGGATGACGAAAATTGACTCTCTCCGTCGATTTCTTCT 84
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 AGAGAGAGAGAGAGAACAAAGAAGGATGACGAAAATTGACTCTCTCCGTCGATTTCTTCT 107
Query 85 TCCATGTATCACACCTCCGACGAACT-CAACCACCGTATCAACAACATCCACCGGAGCTT 143
|||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 108 TCCATGTATCTCAACTCCGACGAA-TCCAACCACCGTATCAACAACATCCACCGGAGCTT 166
Query 144 CCAAGAAACGTCTCAGTACTTCCCTAAGAGACGATATCGACGTTCAAGATTCAGCTTCTT 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CCAAGAAACGTCTCAGTACTTCCCTAAGAGACGATATCGACGTTCAAGATTCAGCTTCTT 226
Query 204 CCTCCGCCTCTTCCTCCGAGGCTACTTCCGCCGCCGCTGACTATAACCTATCCGCCGTCA 263
||||||||||||||||||||||||||||||||| | ||||| | | ||||||||||||
Sbjct 227 CCTCCGCCTCTTCCTCCGAGGCTACTTCCGCCG--TC-GACTACAGCATATCCGCCGTCA 283
Query 264 CGGTGCCGCAGAGACCGTCGAAGACGATGGTGATTGGTACGATATTCGGTAGAAGAAAGG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CGGTGCCGCAGAGACCGTCGAAGACGATGGTGATTGGTACGATATTCGGTAGAAGAAAGG 343
Query 324 GACACGTGTGGTTCTGTGTTCAACACGACCGTCTCTCTGTTAAACCAATCCTTCTCCTCG 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 GACACGTGTGGTTCTGTGTTCAACACGACCGTCTCTCTGTTAAACCAATCCTTCTCCTCG 403
Query 384 AGCTTTCAATAGCTACTAGCCAGTTAGTTCACGAGATGGGTTCGGGTCTTGTTCGTGTGG 443
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 404 AGCTTTCAATAGCTACGAGCCAGTTAGTTCACGAGATGGGTTCGGGTCTTGTTCGTGTCG 463
Query 444 CTTTAGAATGCCCGACCCGACCCGAATTGAAGTCGTGTTTGCTAAGATCCGTACCCGTTT 503
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 464 CTTTAGAATGCCCGACCCGACCCGAATTGAAGTCTTGCTTGCTGAGATCCGTACCCGTTT 523
Query 504 GGACGATGTTCTGTAACGGAAGAAAGCTAGGTTTTGCTGTACGGAGAAGTGCTAATGAAG 563
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 524 GGACGATGTTTTGTAACGGAAGGAAGCTAGGGTTTGCTGTACGGAGAAGTGCTAATGAAG 583
Query 564 AAACGAGGTTGATGTTGAAGAGATTGGAGTCTATGACGGTTGGTGCGGGTGTGTTGCCAT 623
| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 584 AGACGAGGATGATGTTGAAGAGATTGGAGTCTATGACTGTTGGAGCGGGTGTGTTGCCAT 643
Query 624 CTGGATCCGGGTTGGGTGGGTCGGGTGAATCGGATACTGATGAGGTTATGTATATGAGGG 683
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 644 CTGGATCCGGGTTGGGTGGGTCTGATGAATCGGATACTGATGAGGTTATGTATATGAGAG 703
Query 684 CGAATTATGAGCATGTTGTTGGTAGCTCTGACTCGGAGTCGTTTCATCTCATTAACCCGG 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 704 CGAATTATGAGCATGTTGTTGGTAGCTCTGACTCGGAGTCGTTTCATCTCATTAACCCTG 763
Query 744 ATGCTAACTCGGCTCAAGAACTCAGTATCTTCTTGCTCAGGACCTCTAGTTGAATTGGCC 803
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ATGCTAACTCTGCTCAAGAACTCAGTATCTTCTTGCTCAGGACCTCTAGTTGAATTGGCC 823
Query 804 TTTTGGGGTAACTTATGAAT-ACTTTTCATCAAGTTCAGAGATTTTGAAGTCAGATGAGA 862
|||||||||||||||||||| | ||||||||| ||||||||||| |||||||| ||||||
Sbjct 824 TTTTGGGGTAACTTATGAATCA-TTTTCATCATGTTCAGAGATTGTGAAGTCACATGAGA 882
Query 863 AAAATTGAGATTTTTTCAGAGTTCTTGATGAGATATTTCTTTGTGGGTCGTTGGTTCTTG 922
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 883 AAGATTGAGATTTTG--AGAGTTCTTGATGAGATATTTCTTTGTGGGTCGTTAGTTCTAG 940
Query 923 ATCTTTGTAAAACAtttttttGTTAGAAAGATTGATGAttttttt 967
|||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 941 ATCTTTGTAAAACATTATTTTGTTAGAAAGATTGATGATTTTTTT 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5