BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482796
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37900.1 | Symbols: | Major facilitator superfamily protein... 2625 0.0
> AT2G37900.1 | Symbols: | Major facilitator superfamily protein
| chr2:15864396-15866408 REVERSE LENGTH=1728
Length=1728
Score = 2625 bits (1421), Expect = 0.0
Identities = 1633/1735 (94%), Gaps = 15/1735 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCATAAGAAGATTGGTGCAG-A--ACTTCAAGATTCGTACGATGATCAACAGAAA 57
|||||||||||||| |||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGCATAAGAATATTGGTGCAGAAGTACTTCAAGATACGTACGATGATCAACAGAAA 60
Query 58 TGGGTTCTTGATTCTTCTCTCGATAGCAGAGGACGTGTTCCTCTTCGGGCTCGAACTGGC 117
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGGTTCTTGATTCTTCTCTTGATAGCAGAGGACGTGTTCCTCTTCGGGCTCGAACTGGC 120
Query 118 GCTTGGAAG-GCTGCACTCTTTATCATAGCAATCGAGTTCAGCGAGAGATTGAGTTACTT 176
|||||| || ||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 121 GCTTGG-AGAGCTGCACTCTTCATCATCGCGATCGAGTTCAGCGAGAGATTGAGTTACTT 179
Query 177 CGGGTTAGCTACGAACTTGGTTGTCTACCTAACAACAATTCTCCACCAAGATCTCAAGAT 236
|||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 180 CGGGTTAGCTACAAACTTGGTCGTCTACCTAACAACAATTCTAAACCAAGATCTCAAGAT 239
Query 237 GGCTATAAGAAATGTGAACTACTGGTCGGGTGTCACTACTTTGATGCCTCTCCTTGGAGG 296
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 240 GGCTATAAGAAATGTGAACTACTGGTCAGGTGTCACTACTTTGATGCCTCTTCTTGGAGG 299
Query 297 CTTTATAGCCGATGCTTATCTCGGCCGTTACT-CCACTGTCTTGGTTGCAACCACCATTT 355
||||||||||||||| ||||| |||||||| | | |||||||||||||||||||||||||
Sbjct 300 CTTTATAGCCGATGCATATCTAGGCCGTTA-TGCTACTGTCTTGGTTGCAACCACCATTT 358
Query 356 ATCTTATGGGTTTGGTCCTTTTAACAATGTCCTGGTTTATACCAGGCTTGAAACCTTGTC 415
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 359 ATCTTATGGGTTTGGTCCTTTTAACAATGTCCTGGTTCATACCAGGCTTAAAACCTTGTC 418
Query 416 ATGAAGATGTGTGCAATGAACCTAGGAAAGCACACGAAATAGCCTTCTTCATTGCCATTT 475
| |||| |||||| ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 419 ACCAAGAAGTGTGCGTTGAACCTAGAAAAGCACACGAAGTAGCCTTCTTCATTGCCATTT 478
Query 476 ACTTGATCTCCATAGGGACTGGAGGTCATAAACCTTCCCTTGAGAGCTTTGGTGCTGACC 535
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 479 ACTTGATCTCCATAGGGACTGGAGGTCATAAGCCTTCCCTTGAAAGCTTTGGTGCTGACC 538
Query 536 AATTCGAGGATGATCATGTTGAAGAAAGAAAGATGAAGATGTCtttttttAACTGGTGGA 595
||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 539 AATTCGACGATGACCATGTTGAAGAAAGAAAGATGAAAATGTCTTTCTTTAACTGGTGGA 598
Query 596 ACGTTAGTCTATGTGCTGGTATTCTAACGGCCGTGACTGCTGTTGTCTATATCGAAGACC 655
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 ACGTTAGTCTATGTGCTGGTATTCTAACGGCCGTGACTGCTGTTGCCTATATCGAAGACC 658
Query 656 GGGTTGGTTGGGGTGTTGCTGGCATCATACTAACTGTAGTCATGGCTATATCACTTATCA 715
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 GGGTTGGTTGGGGCGTTGCTGGCATCATACTAACTGTAGTCATGGCTATATCACTCATCA 718
Query 716 TCTTCCTCATTGGAAAACCATTCTATCGTTATCGGACTCCTTCGGGTAGTCCTTTGACTC 775
||||| ||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |
Sbjct 719 TCTTCTTCATTGGAAAACCATTCTATCGTTACCGGACACCTTCTGGTAGCCCTTTGACAC 778
Query 776 CAATCTTGCAAGTCTTTGTTGCGGCCATTGCCAAAAGAAATCTACCTTACCCTTCTGATC 835
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 779 CAATCTTGCAAGTCTTTGTTGCCGCCATTGCCAAAAGAAATCTACCTTATCCTTCTGATC 838
Query 836 CTTCTCTGCTTCATGAAGT-TGCCAAGGCAGAGTTTACTAGTGGCCGGCTTCTCTGTCAC 894
||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 839 CTTCTCTGCTTCATGAAGTGT-CCAAGACAGAGTTTACTAGTGGCCGGCTTCTCTGTCAC 897
Query 895 ACACAGCATCTTAAATTTCTTGACAAGGCCGCAATTATTGAAGACAGCAGTCCTCTGGCC 954
||| ||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||
Sbjct 898 ACAGAGCATCTTAAATTTCTTGACAAGGCAGCAATTATCGAAGACAAAAATCCTCTGGCC 957
Query 955 CTCGAGAAACAGAGTCCATGGAGACT-CGTAACATTGACAAAAGTCGAGGAAACGAAGCT 1013
|||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 958 CTCGAGAAACAGAGTCCATGGAGACTTC-TAACGTTGACAAAAGTCGAGGAAACGAAGCT 1016
Query 1014 GATCATCAATGTGATTCCCATATGGCTCTCCACGTTGGCCTTCGGCATCTGTGCAACACA 1073
||||||||| |||||||| |||||| |||||||||||||||| ||||| |||||||||||
Sbjct 1017 GATCATCAACGTGATTCCAATATGGTTCTCCACGTTGGCCTTTGGCATATGTGCAACACA 1076
Query 1074 AGGTTCGACCTTCTTCATCAAACAAGCAATGACTATGGACAGACACATCGGTGGCTTCAC 1133
|| |||||| || ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1077 AGCTTCGACGTTTTTCATCAAACAAGCAATAACCATGGACAGACACATCGGTGGCTTCAC 1136
Query 1134 ACTTCCTCCAGCTTCCATGTTTACACTCACCGCCCTCACATTGATAATCTCACTCACTCT 1193
| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct 1137 AGTTCCTCCAGCTTCCATGTTTACACTTACCGCCCTCACATTGATCATCTCACTCACTGT 1196
Query 1194 CTATGAGAAAATCCTCGTTCCCTTGCTAAGAAACATCACACGGAATCAAAGAGGCATCAA 1253
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1197 CTATGAGAAACTCCTCGTTCCCTTGCTAAGAAGCATCACACGGAATCAAAGAGGCATCAA 1256
Query 1254 CATTCTCCAAAGAATCGGGACCGGTATGGTATTCTCCCTCATCACCATGATCATTGCAGC 1313
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1257 CATTCTCCAAAGAATCGGGACCGGTATGATTTTCTCCCTCATCACCATGATCATTGCAGC 1316
Query 1314 TCTAGTTGAGAAACAACGATTAGACCGTACCAACAACAACAACAAACCTATGAGTGTGAC 1373
||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||
Sbjct 1317 TCTAGTTGAGAAACAACGATTGGACCGTACCAACAACAACAA-AC-CC-ATGAGTGTGAT 1373
Query 1374 ATGGCTAGCTCCTCAATTCATGGTCATTGGCTTTGCGGACGCTTTTACACTCGTTGGACT 1433
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1374 ATGGCTAGCTCCTCAGTTCATGGTCATTGGCTTTGCGGACGCTTTCACACTAGTTGGACT 1433
Query 1434 CCAAGAGTACTTTTACCACCAAGTACCTGACTCCATGAGAAGCTTAGGTATAGCGCTTTA 1493
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1434 CCAAGAGTACTTTTACCACCAAGTCCCTGACTCCATGAGAAGCTTAGGTATAGCGTTTTA 1493
Query 1494 CCTAAGCGTGATAGGCGTGGCTAGCTTCCTTAACAATCTCCTGATCACAGCTATTGATAC 1553
||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1494 CCTAAGCGTGATAGGTGCGGCTAGCTTCCTTAACAATCTCCTGATCACAGCCGTTGATAC 1553
Query 1554 TCTCGCGGAGGATTTCTCGGGGAAGAGTTGGTTCGGAAAGGACCTGAACAGTAGCCGCTT 1613
|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1554 TCTCGCGGAGAATTTCTCGGGGAAGAGTTGGTTCGGAAAGGACCTAAACAGCAGCCGCTT 1613
Query 1614 GGACCGATTCTACTGGTTTCTTGCTGGTGTTATCTCTGCCAATATATGTGTCTTTGTGAT 1673
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1614 GGACCGGTTCTACTGGTTTCTTGCTGGTGTTATCGCTGCCAATATATGTGTCTTTGTGAT 1673
Query 1674 TGTGGCAAAAAGATGTCCTTTCAAAAGTGTGCAGCCAAGCCAAGG-CTCTGCTGA 1727
||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 1674 TGTGGCAAAGAGATGTCCTTACAAAAGTGTGCAGCCAAGCCAAGGGCTCTCCTGA 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5