BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482800
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37940.1 | Symbols: AtIPCS2 | Arabidopsis Inositol phosphory... 1790 0.0
AT3G54020.1 | Symbols: AtIPCS1 | Arabidopsis Inositol phosphory... 1005 0.0
> AT2G37940.1 | Symbols: AtIPCS2 | Arabidopsis Inositol phosphorylceramide
synthase 2 | chr2:15876750-15879655 FORWARD LENGTH=1581
Length=1581
Score = 1790 bits (969), Expect = 0.0
Identities = 1162/1247 (93%), Gaps = 46/1247 (4%)
Strand=Plus/Plus
Query 36 ctt-tttagactttcttcttcgatctctctctgttaactttctttcgtttcgtctctctc 94
||| |||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 98 CTTCTTTAAACTTTCTTCTTCGATCTCTCTTTGTTAACTTTCTTTCGTTACGTCTCTCTC 157
Query 95 gttctcgtttttttttCTTATTCTCAGATCTTGGATTGACGACCATCTCGATCGTTGACC 154
||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 158 GTTCTCG---TTATTTCTTATTCTCAGATCTTGGATTCACGACCATCTCGATCGTTGACC 214
Query 155 GTCGAATTTGGTTTCGGCTAAAAATCAAACCTTTT-----CCGGTGAGAAGCTCGAGAGA 209
||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 215 GTCGAATTTGGGTTCGGCTAAAAATCCAATCTTTTTTTTTCCGGTGAGAAGCTCGAGAGA 274
Query 210 CG-AT-T--TT-------GGTT--G-A-G-TGTT--T-G-GTG-----ATG-T-T-GACC 241
| || | || || | | | | | || | | ||| ||| | | ||||
Sbjct 275 -GTATATAATTTAATAAAGGGTACGTACGATTTTGGTTGAGTGTTTTGATGATGTTGACC 333
Query 242 CAATTCGTTGAGGTCTGAAGTA--CTTATGGAACTGATTGTCACAATACAAGAA---CA- 295
||||| |||| ||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 334 CAATTTGTTGGGGTGTGAAGTATACTTATGGAACTGATTGTCACAATACAAGAAGAACAA 393
Query 296 --TCATCAACAAACAAGAATAATAAGATGACACTTTACATTCGTCGCGAATCTTCCAAGC 353
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 394 CATCATCAACAAACAAGAATAATAAGATGACACTTTATATTCGTCGTGAATCTTCCAAGC 453
Query 354 TATGGAAGAGATTTTGCTCTGAGATATCGACGGAGATTGGTCTTCTTGCTGAGAACTGGA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TATGGAAGAGATTTTGCTCTGAGATATCGACGGAGATTGGTCTTCTTGCTGAGAACTGGA 513
Query 414 AATATCTTCTCGCTGGTCTTATCTGTCAGTACATTCATGGTTTAGCTGCTAAAGGAGTTC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 AATATCTTCTCGCTGGTCTTATCTGTCAGTACATTCATGGTTTAGCTGCTAAAGGAGTTC 573
Query 474 ATTATATTCATCGCCCGGGACCAACGCTTCAGGATCTTGGGTTCTTTCTTCTTCCGGAGC 533
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 574 ATTATATTCATCGCCCGGGACCGACACTTCAGGATCTTGGCTTCTTTCTTCTTCCGGAGC 633
Query 534 TTGGTCAAGAGAGAAGCTACATAAGTGAAACCGTGTTCACTAGTGTGTTTCTTTCGTTTT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TTGGTCAAGAGAGAAGCTACATAAGTGAAACCGTGTTCACTAGTGTGTTTCTTTCGTTTT 693
Query 594 TCCTGTGGACTTTCCATCCATTCATTTTGAAAACCAAAAAGATATACACCGTGTTGATAT 653
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 694 TCCTGTGGACTTTCCATCCATTCATTCTGAAAACCAAAAAGATATACACCGTTTTGATAT 753
Query 654 GGTGCAGAGTTCTAGCATTCTTAGTTGCCTGCCAGTTTCTCCGTGTTATTACTTTCTATT 713
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 754 GGTGCAGAGTTCTAGCATTCTTAGTTGCCTGCCAGTTTCTCCGTGTTATAACTTTCTATT 813
Query 714 CAACTCAGCTTCCTGGCCCTAACTATCACTGTCGCGAGGGCTCTAAAGTTTCCAGGTTGC 773
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 814 CAACTCAGCTTCCTGGCCCTAACTATCACTGCCGTGAGGGCTCTAAAGTTTCTAGGTTGC 873
Query 774 CATGGCCCAAAAGCGCTCTTGAGGTGCTCGAGATTAACCCTCATGGGGTGATGTACGGAT 833
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 874 CATGGCCCAAAAGCGCTCTTGAGGTTCTCGAGATTAACCCTCATGGGGTGATGTATGGAT 933
Query 834 GCGGAGACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTGTCCGTACTTACC 893
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 934 GCGGAGACCTGATTTTCTCATCGCACATGATATTCACTCTAGTCTTTGTCCGTACTTACC 993
Query 894 AGAAATACGGCACTAAAAGGTTCATAAAGCTGTTTGGGTGGCTCATTGCAATCGTGCAGA 953
||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 994 AGAAATATGGCACTAAAAGGTTCATAAAGCTGTTTGGGTGGCTCACTGCAATTGTGCAGA 1053
Query 954 GTCTCTTGATCATTGCCTCTCGTAAACATTACAGTGTCGATGTCGTTGTTGCATGGTATA 1013
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1054 GCCTCTTGATCATTGCCTCTCGTAAACATTACAGTGTCGATGTAGTTGTTGCATGGTATA 1113
Query 1014 CTGTGAATTTGGTGGTGTTCTGTCTAGACAAGAAATTACCAGAATTACCAGATCGGACTG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CTGTGAATTTGGTGGTGTTCTGTCTAGACAAGAAATTACCAGAATTACCAGATCGGACTG 1173
Query 1074 CTGTGTTGCTCCCAGTAATCTCAAAAGACAGAACCAAAGAAGAGAACCACAAGCTGTTGA 1133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1174 CTGTGTTGCTCCCAGTAATCTCAAAAGACAGAACAAAAGAAGAGAACCACAAGCTGTTGA 1233
Query 1134 ATGGGAACGGTGTTGATCCTGCTGATTGGAGGCCGAGGGCTCAGGTGAACGGGAAGATTG 1193
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1234 ATGGAAACGGTGTTGACCCTGCTGATTGGAGACCGAGGGCTCAGGTGAACGGGAAGATTG 1293
Query 1194 ACAGCAATGGAGTTCACACCGATAACTCAATGAATGGCGCGTGAAAA 1240
||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 1294 ACAGCAACGGAGTTCACACGGATAACACAATGAATGGCGCGTGAAAA 1340
> AT3G54020.1 | Symbols: AtIPCS1 | Arabidopsis Inositol phosphorylceramide
synthase 1 | chr3:20005733-20008254 FORWARD LENGTH=1517
Length=1517
Score = 1005 bits (544), Expect = 0.0
Identities = 802/926 (87%), Gaps = 19/926 (2%)
Strand=Plus/Plus
Query 301 AACAAACAAGAATAATAAGATGACACTTTACATTCGTCGCGAATCTTCCAAGCTATGGAA 360
|||||| ||||| || | ||||| ||||| ||||| |||||| |||||||||||||||
Sbjct 350 AACAAAGAAGAA-GAT-A-ATGACGCTTTATATTCGCCGCGAAGCTTCCAAGCTATGGAG 406
Query 361 GAGATTTTGCTCTGAGATATCGACGGAGATTGGTCTTCTTGCTGAGAACTGGAAATATCT 420
||||||||| || || ||| | |||||||||||||| || ||||||||||||||||| ||
Sbjct 407 GAGATTTTGTTCGGAAATAACAACGGAGATTGGTCTCCTCGCTGAGAACTGGAAATACCT 466
Query 421 TCTCGCTGGTCTTATCTGTCAGTACATTCATGGTTTAGCTGCTAAAGGAGTTCATTATAT 480
||| ||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 467 TCTTGCTGGTCTTCTCTGTCAGTATATTCATGGTTTAGCTGCCAGGGGAGTTCATTATAT 526
Query 481 TCATCGCCCGGGACCAACGCTTCAGGA-TCTTGGGTTCTTTCTTCTTCCGGAGCTTGGTC 539
|||||| || |||||||||||||| || || ||| || ||| ||||||||||||||||||
Sbjct 527 TCATCGGCCAGGACCAACGCTTCAAGATTC-TGGCTTTTTTGTTCTTCCGGAGCTTGGTC 585
Query 540 AAGAGAGAA-GCTACATAAGTGAAACCGTGTTCACTAGTGTGTTTCTTTCGTTTTTCCTG 598
|||| | || ||| |||||||||||| ||||||||| |||| |||||||| |||||||||
Sbjct 586 AAGATA-AAGGCTTCATAAGTGAAACTGTGTTCACTTGTGTATTTCTTTCATTTTTCCTG 644
Query 599 TGGACTTTCCATCCATTCATTTTGAAAACCAAAAAGATATACACCGTGTTGATATGGTGC 658
|||||||||||||| ||||| |||||| ||| ||||||||||| |||||||||||||||
Sbjct 645 TGGACTTTCCATCCTTTCATCGTGAAAAGCAAGAAGATATACACTGTGTTGATATGGTGC 704
Query 659 AGAGTTCTAGCATTCTTAGTTGCCTGCCAGTTTCTCCGTGTTATTACTTTCTATTCAACT 718
|| ||||| || ||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 705 AGGGTTCTCGCCTTCTTAGTTGCTTGTCAGTTTCTCCGTGTTATAACATTCTATTCAACT 764
Query 719 CAGCTTCCTGGCCCTAACTATCACTGTCGCGAGGGCTCTAAAG-TTTCCAGGTTGCCATG 777
||||||||||||||||||||||||||||| ||||| ||| || || ||||||||||| |
Sbjct 765 CAGCTTCCTGGCCCTAACTATCACTGTCGAGAGGGTTCT-GAGCTTGCCAGGTTGCCAAG 823
Query 778 GCC-CAAAAGCGCTCTTGAGGTGCTCGAGATTAAC---CCTCATGGGGTGATGTACGGAT 833
||| || || || ||||||||| ||| | | ||| |||| ||| ||||| |||||||
Sbjct 824 GCCACATAA-CGTTCTTGAGGTTCTCTTGCTCAACTTTCCTCGTGGTGTGATATACGGAT 882
Query 834 GCGGAGACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTGTCCGTACTTACC 893
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 883 GTGGAGACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTGTCCGCACTTACC 942
Query 894 AGAAATACGGCACTAAAAGGTTCATAAAGCTGTTTGGGTGGCTCATTGCAATCGTGCAGA 953
|||||||||| |||||||||||||||||||||| || ||| ||||||| ||| |||| |
Sbjct 943 AGAAATACGGTTCTAAAAGGTTCATAAAGCTGTTAGGTTGGGTCATTGCCATCTTGCAAA 1002
Query 954 GTCTCTTGATCATTGCCTCTCGTAAACATTACAGTGTCGATGTCGTTGTTGCATGGTATA 1013
| |||||||| ||||| || ||||||||||||| ||| ||||| |||||||| |||||||
Sbjct 1003 GCCTCTTGATTATTGCGTCCCGTAAACATTACACTGTTGATGTGGTTGTTGCGTGGTATA 1062
Query 1014 CTGTGAATTTGGTGGTGTTCTGTC-TAGACAAGAAATTACCAGAATTACCAGATCGGACT 1072
||||||| ||||| || |||| || | |||||||||||||||||||| || ||||| ||
Sbjct 1063 CTGTGAACTTGGTTGTCTTCT-TCCTCGACAAGAAATTACCAGAATTGCCTGATCGAACA 1121
Query 1073 GCTGTGTTGCTCCCAGTAATCTCAAAAGACAGAACCAAAGAAGAGAACCACAAGCTGTTG 1132
| | |||||||| || |||||||||||||||||||||||||||| ||||| || |||
Sbjct 1122 ACGGCATTGCTCCCTGTGATCTCAAAAGACAGAACCAAAGAAGAGAGTCACAAACTCTTG 1181
Query 1133 AATGGGAACGGTGTTGATCCTGCTGATTGGAGGCCGAGGGCTCAGGTGAACGGGAAGATT 1192
||||||||||||||||||||||| ||| |||| ||||||||||| ||||| || || |
Sbjct 1182 AATGGGAACGGTGTTGATCCTGCAGATCGGAGACCGAGGGCTCAAGTGAATGGCAA-A-- 1238
Query 1193 GACAGCAATGGAGTTCACACCGATAA 1218
||||||||||||| |||||| |||||
Sbjct 1239 GACAGCAATGGAGGTCACACTGATAA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5