BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482801
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37950.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1267 0.0
AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 99.0 7e-20
> AT2G37950.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr2:15882488-15883979 REVERSE LENGTH=986
Length=986
Score = 1267 bits (686), Expect = 0.0
Identities = 883/969 (91%), Gaps = 50/969 (5%)
Strand=Plus/Plus
Query 1 TATTAATTTATTCTTCATCTTGTAGAAAAATATCTTCTTCCTTAACAAT-A---TAGTTT 56
||| ||||||||||||||||||||||| ||||||||||||||||| ||| | | |||
Sbjct 34 TATAAATTTATTCTTCATCTTGTAGAACAATATCTTCTTCCTTAATAATAATTTTTTTTT 93
Query 57 TTCACTTTCACTCTGTTTTTAGCTTATTATGAATTCCTGCTCCACCACTACTCACTCACT 116
|||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||
Sbjct 94 TTCACTTTCACTCTGTTTTTAGCTTA-T-T-AATTCCTGCTCCATCACTACTCACTCACT 150
Query 117 CCTCCTACAATTTGGTTACTCAATTTTCTTAGTTAATATTTTTTGTTAAA-ATCACCAAA 175
||||||||||||| ||||||||| ||| ||| || |||||||||| |||| | |||||||
Sbjct 151 CCTCCTACAATTTCGTTACTCAA-TTT-TTA-TT-ATATTTTTTG-TAAAGAACACCAAA 205
Query 176 TCCACCAAAAACC-TACTTCCTTAAATCCCTTCAATTCTATTCTCATTTCCATATTTA-- 232
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TCCACC-AAAACCTTACTTCCTTAAATCCCTTCAATTCTATTCTCATTTCCATATTTATT 264
Query 233 T-T-CACTTTGGCA-T-T------ATa-aaa-a---a--aGGC-AAAATAATGACG---G 271
| | ||||||||| | | | | ||| | | |||| |||||||||||| |
Sbjct 265 TATATACTTTGGCATTGTAAACAAAAAGAAACATTCATTAGGCAAAAATAATGACGACTG 324
Query 272 ACATCGATTTAGAACAAGGAGGAGCTTTTGGATATCATCACCGGCGGTCATTGGACGGAA 331
||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||||
Sbjct 325 ACATCGATTTAGAACAAGGAGGAGCTTTTGG--AT-ATCACCGGAGGTCGTTGGACGGAA 381
Query 332 GTGACGTAAGCGTTTATTATTCAGACGGTGAAGATTTGACGTCATGCTACTCTTACTTCT 391
||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 382 GTGACGTCAGCGTATATTATTCAGACGGTGAAGATGTGATGTCATGCTACTCTTACTTCT 441
Query 392 ATTCAACGACTGGAGGATCGTATGAATACGAAGGAGATCAGTCGAGGAAAGTGTCGTCGG 451
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATTCGACGACTGGAGGATCGTATGAATACGAAGGAGATCAGTCGAGGAAAGTGTCGTCGG 501
Query 452 TGATGAGTC--T-GTCGTCGGAGATAGATGATGATGATGCGT-CGGCGCCGCCGGAGAAA 507
||||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 502 TGATGAGTCCCTCGTCGTCGGAGATAGATGATGATGATGC-TACGGCGCCGCCGGAGAAA 560
Query 508 GATTGTCGTATATGTCATATGGGAGTGGAAACGAGCGGTGGAGGAGGGATTGAATTAGGG 567
|||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 561 GATTGTCGGATATGTCATTTGGGAGTGGAAACGAGCGGTGGAGGTGCGATTGAATTAGGG 620
Query 568 TGTTCTTGTAAAGACGATTTGGCTGTTGCTCATAGACAATGTGCTGAGACTTGGTTCAAG 627
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 621 TGTTCTTGTAAAGACGATTTGGCTGTTGCTCATAGACAATGCGCTGAGACTTGGTTCAAG 680
Query 628 ATCAAAGGCGACAAAATCTGCGAGATTTGCCAATCGGTAGCCCGAAATGTCGGCGGTGCG 687
|||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||
Sbjct 681 ATCAAAGGCGACAAAACCTGCGAGATTTGCCAATCGGTAGCCCGGAACGTCGGCGGTGCG 740
Query 688 AACGAAATGGTTGTGTCAACGATGGAAGAGAGGGAGTTGAGAAACAGTGATCAGGAAACT 747
||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 741 AACGAAATGGTTGGGTCAACGATGGAAGAGAGGGAGTTGAGAAACGGTGA---GGAAACA 797
Query 748 GCGGCGGTAGGAGGCGGAGGAGCAACGGTGGTGGAGAACAGGTGGCAGCCACAGAGAGTG 807
||||||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 798 GCGGCGGGAGAAGGCGGAGGAGCAACGGTGGTGGAGAACAGATGGCAACCACAGAGAGTG 857
Query 808 GTGAATTTAGTGTTAGCTTGTATGGTTTTTGGCTTCTTTATATCATGGATCTTTCATTTC 867
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 858 GTGAATTTGGTGTTAGCTTGTATGGTTTTTGGGTTCTTTATATCATGGATCTTTCATTTC 917
Query 868 CATGTTTCCTCTTCTTCTTGAACCCATAA-AATACTTATGGTCTTGCAATCAAACTACAC 926
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 918 CATGTTTCCTCTTCTTCTTGAACCCATAATAATACTTACGGTATTGCAATCAAACTACAC 977
Query 927 ACTTTACTT 935
|||||||||
Sbjct 978 ACTTTACTT 986
> AT5G05830.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:1755766-1757085 FORWARD LENGTH=1019
Length=1019
Score = 99.0 bits (53), Expect = 7e-20
Identities = 72/81 (89%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 568 TGTTCTTGTAAAGAC-GATTTGGCTGTTGCTCATAGACAATGTGCTGAGACTTGGTTCAA 626
||||||||||||| | ||| | |||| |||||||| ||| ||||||||||||||||||||
Sbjct 445 TGTTCTTGTAAAG-CTGATCTCGCTGCTGCTCATAAACACTGTGCTGAGACTTGGTTCAA 503
Query 627 GATCAAAGGCGACAAAATCTG 647
||||||||| ||||||||||
Sbjct 504 GATCAAAGGAAACAAAATCTG 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5