BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482805
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37990.1 | Symbols: | ribosome biogenesis regulatory protei... 1742 0.0
> AT2G37990.1 | Symbols: | ribosome biogenesis regulatory protein
(RRS1) family protein | chr2:15900635-15903218 FORWARD LENGTH=1225
Length=1225
Score = 1742 bits (943), Expect = 0.0
Identities = 1162/1260 (92%), Gaps = 46/1260 (4%)
Strand=Plus/Plus
Query 1 AAAATATCGCAAAACCCTAAGaaaaaaaGTTTCTTTCTTTCTTCCTCCA--CTCTCAATT 58
|||||||||||||||||||| |||||| | |||| ||||||||||| |||||||||
Sbjct 1 AAAATATCGCAAAACCCTAA-CAAAAAA---T-TTTCATTCTTCCTCCACTCTCTCAATT 55
Query 59 CCAAAACACTGCGCCGGGAAGACATGGAGACCGAGATGGAGACAGAACAGATATACCAGG 118
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 56 CCAAAACACTGCGCCGGGAAGACATGGACACCGAGATGGAGACAGAACAAATATACCAGG 115
Query 119 TCGATGTCGGAAATCTCTTGGCTTTCAATCCCAATCACCGCTTCCCTTCTGCTCCTTCTT 178
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 116 TCGATGTCGGAAATCTCTTGGCTTTCAATCCCAATCACCGCTTCCCATCTGCTCCTTCTT 175
Query 179 CAAGGGAGGAGCTTGTGAATGAG-TGCATTAGGGAGGGAACAAAACTTGTTCAGGCAATA 237
|||||| |||||||||||| ||| | | | | ||||||||||||||||||||||| ||||
Sbjct 176 CAAGGGGGGAGCTTGTGAAGGAGAT-CCTAACGGAGGGAACAAAACTTGTTCAGGAAATA 234
Query 238 GCTAATACTCTTTTCAACTTTCCTTCTACTGAAACTAATGATGGTCCTATTGTCCAATTG 297
|| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 235 GCCAATAAACTTTTCAACTTTCCTTCTACTGAAACAAATGATGGTCCTATTGTCCAATTG 294
Query 298 CCTCCGCCTACAACCAAACTTCCTAGAGAGAAACATATTCCAAGGCCTAAGCCTCCTACA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CCTCCGCCTACAACCAAACTTCCTAGAGAGAAACATATTCCAAGGCCTAAGCCTCCTACG 354
Query 358 AAGTGGGAAGAATTTGCGCTCAAGAAAGGTATACAGAAGCGCAAGAAGGATAAACTTGTA 417
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 355 AAGTGGGAAGAGTTTGCGCTTAAGAAAGGTATACAGAAGCGCAAGAAGGAAAAAGTTGTA 414
Query 418 TATGATGAACAAACTGATCAGTTTAAGCGCCGCCATGGTTACGACCGTGTTAACGATGAT 477
| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 415 TGGGATGAACAAACTAATCAGTTTAAGCGTCGCCATGGTTATGACCGTGTTAACGATGAT 474
Query 478 AATGATGTTCCCATCATTGAGGC-AAAGGCAA-CAGATGAACCAGGAGTAGATCCTTTTG 535
||||||||||||||||||||||| ||| | || |||||||||||||||||||||||||||
Sbjct 475 AATGATGTTCCCATCATTGAGGCGAAA-G-AATCAGATGAACCAGGAGTAGATCCTTTTG 532
Query 536 CCAAGAGACTGGATGACAAAAAGAAGAGAGTTGGAAAGCAAGAAAAGAATCGACTTCAGA 595
|||||||||| ||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 533 CCAAGAGACTAGATGATAAGAAGAAGAGAGTTGGAAAGCAAGAAAAGAATAGACTTCAGA 592
Query 596 ATTTGAAGGCAGCTGAAAAAGCTGGTGCTTTACCAAGCCATGTTCAACTTGCTGCAACAT 655
|| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 593 ATCTGAAGGCTGCTGAAAAAGCTGGTGCTTTACCAAGCCATGTCCAACTTGCTGCAACAT 652
Query 656 CGTTGCCCATATCAGGAACGAAAGCTCAACCAAAGAAAATTGGAAAGGATGAACTTGGAG 715
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CATTGCCCATATCAGGAACGAAAGCTCAACCAAAGAAAATTGGAAAGGATGAACTTGGAG 712
Query 716 ACGTAGCAGGTTTAGCCGCTACTTCAACCGCTAGTGGTGGAAAATTCGATAAAAAGCTGC 775
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 713 ATGTAGCAGGTTTAGCCGCTACTTCAACCGCTAGTGGTGGAAAATTCGATAAAAAGTTGC 772
Query 776 CTGGAGAAAAACCTCCTAAGAAGCAGGGCAAACATCACAAGTATTTACCGGTTGTAGCAG 835
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 773 CTGGAGAAAAACCTCCAAAGAAGCAGGGCAAACATCACAAGTATTTACCGGTTGTATCAG 832
Query 836 GGCGCGGGGATGCTAACGCAGAAAAAGAACAGACAAATAATGTACTCAGCAAGATATTCT 895
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GGCGTGGGGATGTTAACGCAGAAAAAGAACAGACAAATAATGTACTCAGCAAGATATTCT 892
Query 896 CAAAGCATTCGCATGAGATCCTCAATGTTGGCAAGGCGATAAACATGTACAACGTCAAGA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CAAAGCATTCGCATGAGATCCTCAATGTTGGCAAGGCGATAAACATGTACAACGTCAAGA 952
Query 956 AGGAGAAGAAGAAGTCAGGAAGGTCAGACAAGTCAGGAAGGTCGGACAAGTTGAAACCTA 1015
||||||||||||||||||||||||||||||||| | | | || ||||
Sbjct 953 AGGAGAAGAAGAAGTCAGGAAGGTCAGACAAGT--------T-G-A-AA-------CCTA 994
Query 1016 AGAAGGACATCACCAAGAAGTCTGCCAACAAAGCCAAGTGAAGAGACTCTCCCATGTCTA 1075
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 995 AGAAGGACATCACCAAGAAGCCTGCCAACAAAGCCAAGTGAAGAGACTCTCCCATGTCTA 1054
Query 1076 ATTTACTCTTCTATCTGTCTCCATCTTCTTGTATCACTAAACAAATTTTGGGTTCCGCCT 1135
||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |
Sbjct 1055 ATTTACTCTTCTATCTGTCTCCATCTTCT---ATCACAAAACAAATTTTGGGTT--GC-T 1108
Query 1136 ATCTGGTAGAGAAATACTTTAT-ATCTATGTTTGATAAAAA-CTTATTGACTTCAT-TTT 1192
||| || || |||||||||| | || |||| || || |||||||||||||| |||
Sbjct 1109 --CTGTTAAAGTAATACTTTATGAG-TACGTTT-ATTTTAATCTTATTGACTTCATATTT 1164
Query 1193 -GCACCATACAACAATTTAAAGCTCACAAAGGTCTAGAAATCCAGTCTGATTTTCTCTCT 1251
|||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 1165 TGCACCATAAAACAATTTAAAGCTCGCAA-GGTCTAGAAATCCAGTTTGATTTTCTCTCT 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61495667625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5