BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482806
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38000.1 | Symbols: | chaperone protein dnaJ-related | chr2... 2193 0.0
> AT2G38000.1 | Symbols: | chaperone protein dnaJ-related | chr2:15903125-15905391
REVERSE LENGTH=1565
Length=1565
Score = 2193 bits (1187), Expect = 0.0
Identities = 1374/1463 (94%), Gaps = 17/1463 (1%)
Strand=Plus/Plus
Query 45 TTTGGTTTATTGCGAAGACATAGAGATTCGCAATCCATGGATAAGCCTCTGCTTTCAGGA 104
||||||| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 80 TTTGGTTAATTGGGAAGACAGAGAGATTCGTAATCCATGGATAAGCCTCTGCTTTCAGGA 139
Query 105 TCAGAGAAAACGAGTGAATCCGAAAGGTTGGATTCATACCAGTACCTGCAGAGAAATAGC 164
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 140 TCAGAGAAAACGAATGAATCCGAGAGGTTGGATTCATACCAATACCTGCAGAGAAATAGC 199
Query 165 TCATCTGCTCGTAACCCTTCGTTCGCCGGAGCT-G-G-CGTCACCGTCGAAGAAATCCGT 221
||||||||||||||||| || |||||||||||| | | ||||||||||||||||||||||
Sbjct 200 TCATCTGCTCGTAACCCATCTTTCGCCGGAGCTGGCGTCGTCACCGTCGAAGAAATCCGT 259
Query 222 ACCGCTTCTGCTGTTTCTTCTGATCCCCCGTCTCTCTATCCTCCCGTTATCAAGACCCCT 281
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 260 ACCGCTTCTGCTGTTTCTTCTGATCCTCCGTCTCTTTATCCTCCCGTTATCAAGACCCCT 319
Query 282 GTTTCGTTACCCATTCCTCAAGCTATTGGTTATCCGAGTGCATCTGGAGCAGGTCATGAA 341
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 320 GTTTCGTTACCCATTCCTCAAGCTATTGGTTATCCAAGTGCATCTGGAGCAGGTCATGAA 379
Query 342 TTG---CAAAGGCAGTTTCTTGATGAGATTGAAATAAGAGAGCTGCTTATTGATCATATT 398
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTGCAACAAAGGCAGTTTCTTGATGAGATTGAAATAAGAGAGCTGCTTATTGATCATATT 439
Query 399 GGCCATCGTTGCTGTTGGGGAAGCCGTCCTGCTCGTACATGGAAGATTCATGCTGTTGAA 458
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GGTCATCGTTGCTGTTGGGGAAGCCGTCCTGCTCGTACATGGAAGATTCATGCTGTTGAA 499
Query 459 GACTGCAATGTTTATGTGGGAACTCTTGACACTTTCATTGAGGAGAGGGAAGCTTTAACA 518
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 500 GACTGCAATGTTTATGTCGGAACTCTTGATACTTTCATTGAGGAGAGGGAAGCTTTGACA 559
Query 519 CTGACAGTGCCTTTCACTGGTGGTGATTTCAATGGAAAGAAACATGGATCTGAACCGGAG 578
| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 560 CAGACTGTGCCTTTCACTGGTGGTGAATTCAATGGAAAGAAACATGGATCTGAACCGGGG 619
Query 579 TTATGGCAATTGGACCTGAGATCGCAATTTCCTACTCTCTTTGTCCCGTATAAAGAAACT 638
|||||| || ||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 620 TTATGGGAACTGGACCTGAGACCGCAGTTTCCTACTCTGTTTGTCCCGTATAAAGAAACT 679
Query 639 CAAGTTCC-GGTTCCTAATTCTGAGACTGTTGAGAAGTGCACGGGTTGCACAGGAAGAGG 697
||||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 680 CAAGT-CCTGGTTCCTAATTCTGAGACTGTTGAGAAGTGCACAGGTTGCACCGGAAGAGG 738
Query 698 AGATGTAGTATGTCCAACATGCAATGCCGATGGAGAGCCGGGATTTTACAAGGAGAATCA 757
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 739 AGATGTAGTATGTCCAACATGCAATGCTGATGGAGAGCCAGGATTTTACAAGGAGAATCA 798
Query 758 GATGATGAAGTGTTCCACTTGCTATGGAAGAGGTTTGGTTGCTCATAAAGATGGGTCTGA 817
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 799 GATGATGAAGTGTTCCACTTGCTATGGAAGAGGCTTGGTTGCTCATAAAGATGGGTCCGA 858
Query 818 CACAATATGCACAAACTGCAGCGGTAAGGGAAAGCTTCCCTGCCCAACTTGCCAATCTCG 877
|||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 859 CACAATATGCACCAACTGTAACGGTAAGGGAAAGCTTCCTTGCCCAACTTGCCAATCTCG 918
Query 878 CGGGTTAATCAAATGTCAGACTTGTAACAGTACTGGATCTCTTTTGACAAGCAGTATCGC 937
||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||
Sbjct 919 CGGGTTAATCAAATGTCAGACTTGTGACAGTACTGGTTCTCTTCTGACAAGTAGTATCGC 978
Query 938 AGTTGTAAGATGGAAGACTTTGTCGAAGCGAAAGGTGAGTGCAACAAGAGGGGCTGGTTC 997
|||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 979 AGTTGTAAAATGGAAGACTCTGTCGAAGCGAAAGGTGAGTGCAACAAGAGGAGCTGGGTC 1038
Query 998 AGTACCAGAAGAAGTATTTGACAGAGCAGAAGGAGTTCAGCTTTGCAACACACAAGCTTA 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 AGTACCAGAAGAAGTATTTGACAGAGCAGAAGGAGTTCAGCTTTGCAACACACAAGCTTA 1098
Query 1058 CCAGTGCACGCCGGCTTACTTTGCAGACTCATATTTCCTCAACAGATTCTCCTCAGAAGT 1117
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 CCAGTGCACGCCAGCTTACTTTGCAGACTCATATTTCCTCAACAGATTCTCCTCAGAAGT 1158
Query 1118 AATCTCGTTAAGAGCTGAAGTTCCACCGACGGCGAATGTGGTCTGCGAGAGACACACCAT 1177
||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||
Sbjct 1159 TATCTCGTTAAGAGCTGAAGTTCCACCGACAGCGAATGTAGTATGTGAGAGACACACCAT 1218
Query 1178 ATCTGTTGTGCCTGTCACTCGTGTCACCATGGAAGATCGTGGTAAAGCGTTCAGCTTTTA 1237
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1219 ATCTGTTGTGCCTGTGACTCGTGTCACCATGGAAGATCGTGGGAAAGCGTTCAGCTTTTA 1278
Query 1238 CATAATCGGTTTTGGTAAAGAGATATACTTGAAAGATCATTACCCAGCAAGGTTCTGTTG 1297
|||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1279 CATAATCGGTTTTGGTAAGGAGATATACTTGAAAGATTATTACCCAGCAAGATTCTGTTG 1338
Query 1298 GGGTTTGTGTCCTTGTCTTGAGTGGTTAAAGGTTTGAAAAACCAGAATTGATCTTTCTTC 1357
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1339 GGGTTTGTGTCCCTGTCTTGAGTGGTTAAAGGTTTGAAAAACCAGAGTTGATCTTTGTTC 1398
Query 1358 TTGTCTACTTGGGTGTAAAGAAACAA-ACAAGAGCGGT-GTGTATACTATT-GTAT-TGT 1413
|| |||||||| |||||||| |||| | | ||| | | || || | || | || | |
Sbjct 1399 TTCTCTACTTGAATGTAAAGAGACAAGATA-GAGTG-TAGTCAATG-TGTTTGAATAT-T 1454
Query 1414 ATTGTGGATTGAGAGCTTTAGAGAGAAAATCAGACTGGATTTCTAGACCTTTGTGAGCTT 1473
| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 1455 AGTGTGGATTGAGAGCTTTAGAGAGAAAATCAAACTGGATTTCTAGACCTT-GCGAGCTT 1513
Query 1474 TAAATTGTTGTATGGTGCAAAAT 1496
||||||||| |||||||||||||
Sbjct 1514 TAAATTGTTTTATGGTGCAAAAT 1536
Score = 75.0 bits (40), Expect = 2e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1 AAATTTATCTCACACGGAGAAGAAGATCGAATTGACCTGGGTTTTT 46
|||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 8 AAATTTCTCTCGCACGGAGAAGAAGATCGAATTGACCTGGGTTTTT 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5