BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482809
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38025.1 | Symbols: | Cysteine proteinases superfamily prot... 1146 0.0
> AT2G38025.1 | Symbols: | Cysteine proteinases superfamily protein
| chr2:15914958-15916733 REVERSE LENGTH=1027
Length=1027
Score = 1146 bits (620), Expect = 0.0
Identities = 686/718 (96%), Gaps = 3/718 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCTCAAATCTTCTTCCAACAATAACATTCTTGAGCAGCTGAGAAATGGGTTCGCT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 42 ATGGAGCTCAAATCTTCTTCCAACAATAACATTCTAGAGCAGCTGAGAAATGGCTTCGCT 101
Query 61 CGATTCGAGCTTGTTTCTTCCCCTACTGCTTCTATTTCAGATTCAATCTCCTCCACTTCA 120
||||||||||||||||||| |||||||||||| | ||||||||||| || |||||||||
Sbjct 102 AGATTCGAGCTTGTTTCTTCTCCTACTGCTTCTGTGTCAGATTCAATATCTTCCACTTCA 161
Query 121 GTCCCCGCTTCATTCATGAGCGCAACGAAGGGAAATAGCTATGTGTTCTTCGCCAGAATC 180
|||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 162 CTCCCTGCTTCATTCATAAGCACAACGAAGGGAAATAGTTATGTGTTCTTCGCCAGAATC 221
Query 181 GGTTCCTCGATGAATCGGTCTCCTGCAGCGAAAAAGGTTGAGCAGTATGCTGTGGATAGA 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 222 AATTCCTCGATGAATCGGTCTCCTGCAGCGAAAAAGGTTGAGAAGTATGCTGTGGATAGA 281
Query 241 GTTAAAGGGGATGGGAGATGTCTGTTTCGAGCATTGGTGAAAGGAATGGCCTTTAATAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GTTAAAGGGGATGGGAGATGTCTGTTTCGAGCATTGGTGAAAGGAATGGCCTTTAATAAG 341
Query 301 GGTATTATTCTAAACCCCCAACGAGAGAGAGATGATGCAGATGAGTTACGAATGGCTGTG 360
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GGTATTACTCTTAACCCCCAACGAGAGAGAGATGATGCAGATGAGTTACGAATGGCTGTG 401
Query 361 AAAGAGGTTATATGCAATGATCCCAAGGAAAGGGACAAGTACAAAGAAGCTTTAGTGGCT 420
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 402 AAAGAGGTTATATGCAATGACCCCAAGGAAAGGGAGAAGTACAAAGAAGCTTTAGTGGCT 461
Query 421 ATCACTGTGGATGAGTCTCTGAAACGCTATTGCCAGCGGATTGGAAGACACGATTTCTGG 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 462 ATCACTGTGGATGAGTCTCTGAAACGCTTTTGCCAGCGGATTGGAAGACACGATTTCTGG 521
Query 481 GGAGGAGAGTCCGAGCTACTAGTTCTTTCTAAGCTATGTAAACAGCCTATCATCGTCTAC 540
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 522 GGAGGAGAGTCCGAGCTGCTAGTTCTCTCCAAGCTATGTAAACAGCCTATCATCGTCTAC 581
Query 541 ATACCCGAGCACGAGCATGG-A-A-GAGGAGGGTATGGGCCGGGTTTTATACCGATTCAA 597
||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 582 ATACCTGAGCACGAGCATGGAAGAGGAGGAGGGTATGGGCCGGGTTTTATACCGATTCAA 641
Query 598 GAGTATGGAGGTGAGTTTCGAGGAGGATGGGGAAAAGGGAAGACAAACAAGAATGTTGTT 657
||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 642 GAGTATGGAAGTGAATTTCGAGGAGGCTGGGGAAAGGGGAAGACAAACAAGAATGTTGTT 701
Query 658 AGGCTTCTTTACAGTGGTAGAAACCACTATGATTTGCTTCGTTGACCAAAtttttttt 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 AGGCTTCTTTACAGTGGTAGAAACCACTATGATTTGCTTCGTTGACCAAATTTTTTTT 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5