BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482810
Length=2884
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38040.1 | Symbols: CAC3 | acetyl Co-enzyme a carboxylase ca... 4309 0.0
AT2G38260.1 | Symbols: | pseudogene, similar to carboxyl trans... 267 6e-70
> AT2G38040.1 | Symbols: CAC3 | acetyl Co-enzyme a carboxylase
carboxyltransferase alpha subunit | chr2:15917093-15921170 FORWARD
LENGTH=2963
Length=2963
Score = 4309 bits (2333), Expect = 0.0
Identities = 2708/2881 (94%), Gaps = 58/2881 (2%)
Strand=Plus/Plus
Query 1 TTGTTTCCCAATCTGCATAAGAAATATCGAAACACTTCCACACAAAATCCA--CG----- 53
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 36 TTGTTTCCCAATCTGCATAAGAAATATCGAAACACTTCCACACAAAATCCACGCGCTCTC 95
Query 54 ---CGCTCACTCACTCGCATAACACTTGTT-C--CTTCTCTCAATTTC-AAATACGACGA 106
||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||
Sbjct 96 TCACGCTCACTCACTCGCATAACACTTGTTCCTTCTTCTCTCAATTTCAAAAAACGACGA 155
Query 107 TCTCTTCGATGCTTGCTCTTCCTTTCTCCTTCTTCATTCCCTTCTGATTCTG-TGATCGA 165
|||||||||||||| ||||||| | |||| ||||||| |||||||| |||| | ||
Sbjct 156 TCTCTTCGATGCTTTCTCTTCC--T-TCCTCCTTCATTTCCTTCTGACTCTGCTCTTC-- 210
Query 166 TGATTGC-T-TTTGATC-T--AATTTGTCTTGGT-ATTTGTTCA-T-TTAGAGGATACAT 217
| || | | || |||| | |||||||||| || ||||| | | ||| || ||| |
Sbjct 211 TTCTT-CGTCTTGGATCTTCGAATTTGTCTTTGTGATTTG---AGTGTTATAGAATAAAG 266
Query 218 ATCTGTTTGGAGTGGATCCATTCAAAAGTAATTGAAGAAATCAACTCAAAGAATGGCTTC 277
||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||
Sbjct 267 ATCTGTTTGGAGTGGATCCATTC--AAGTAATTGAAGAACTCAACGCAAAAAATGGCTTC 324
Query 278 AATATCTCATTCATCACTAGCATTAGGAGGAGCTTCTTCTGCTTCTGCTTCGGATTACTT 337
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 325 AATATCGCATTCATCACTAGCTTTAGGAGGAGCTTCTTCTGCTTCTGCTTCAGATTACTT 384
Query 338 GCGTAGTTCGAGCAATGGTGTTAATGGGGTACCATTGAAAACCTTAGGAAGAGCAGTGTT 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GCGTAGTTCGAGCAATGGTGTTAATGGGGTACCATTGAAAACCTTAGGAAGAGCAGTGTT 444
Query 398 TACTACCATTAGAAGGAAGGACCTGGCGGTGACATCTAGGCTCAAGAAAGGTAAGAAATT 457
||||||||| || ||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct 445 TACTACCATCAGGAGGAAGGACTTGGCGGTGACATCTCGGCTCAAGAAAGGGAAGAAATT 504
Query 458 TGAGCATCCATGGCCTGCGAATCCTGACCCGAATGTGAAAGGAGGAGTCTTGTCGTATCT 517
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 505 TGAGCATCCATGGCCTGCAAATCCTGACCCGAATGTGAAAGGAGGAGTCTTGTCTTACCT 564
Query 518 GTCCGAGTTCAAACCTTTGGGGGATACTCAAAAGCCTGTCACTTTGGATTTCGAGAAACC 577
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 565 GGCCGAGTTCAAACCATTGGGGGATACTCAAAAGCCTGTCACTTTGGATTTCGAGAAGCC 624
Query 578 ACTAGTCGAATTGGAGAAGAAGATTGTCGATGTGAGGAAGATGGCGAATGAAACCGGGTT 637
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 625 ACTAGTCGAATTGGAGAAGAAGATTGTTGATGTGAGGAAGATGGCGAATGAAACGGGGTT 684
Query 638 AGACTTCACTGAGCAGATTATCACTTTGGAGAACAAGTATAGACAGGCACTGAAAGATCT 697
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GGATTTCACTGAGCAGATTATCACTTTGGAGAACAAGTATAGACAGGCACTGAAAGATCT 744
Query 698 TTACACGCATCTCACTCCAATACAACGTGTGAACATTGCGCGCCATCCCAACCGACCTAC 757
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 745 TTACACGCATCTTACTCCGATACAACGTGTGAACATTGCGCGCCATCCCAACCGACCTAC 804
Query 758 TTTCCTTGATCATATACATAACATCACTGACAAGTTTATGGAGCTTCATGGAGACCGAGC 817
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 805 TTTCCTTGATCATATACATAACATAACTGACAAGTTTATGGAGCTTCATGGAGACCGAGC 864
Query 818 GGGGTATGATGACCCTGCAATTGTGACCGGTATTGGAACCATCGATGGAAAACGTTACAT 877
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 865 GGGGTATGATGACCCTGCAATTGTGACGGGTATTGGAACCATAGATGGAAAACGTTACAT 924
Query 878 GTTCATAGGTCACCAGAAAGGTAGAAACACCAAAGAAAATATAATGCGTAACTTTGGTAT 937
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 925 GTTCATAGGTCACCAGAAAGGTAGAAACACCAAAGAAAATATAATGCGGAACTTTGGTAT 984
Query 938 GCCTACTCCTCACGGATATAGGAAAGCACTTCGGATGATGTATTATGCAGACCATCACGG 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 GCCTACTCCTCACGGATATAGGAAAGCACTTCGGATGATGTATTATGCAGACCATCACGG 1044
Query 998 TTTTCCTATCGTGACATTCATCGACACTCCTGGAGCCTATGCAGACCTTAAATCCGAGGA 1057
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1045 TTTTCCAATCGTGACATTTATCGACACTCCTGGAGCCTATGCAGATCTTAAATCCGAGGA 1104
Query 1058 ACTCGGACAGGGTGAAGCGATTGCCAACAATCTGAGGACGATGTTTGGCCTGAAAGTGCC 1117
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1105 ACTTGGACAGGGTGAAGCGATTGCCAACAATCTGAGGACGATGTTCGGCCTGAAAGTGCC 1164
Query 1118 AATTCTTTCTATTGTCATTGGGGAAGGTGGTTCTGGTGGTGCTTTAGCCATTGGCTGTGC 1177
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1165 AATTCTTTCTATTGTCATTGGGGAAGGTGGTTCTGGTGGTGCCCTAGCCATTGGCTGTGC 1224
Query 1178 TAATAAAATGCTGATGCTCGAAAACGCAGTTTTCTATGTTGCCAGTCCAGAGGCCTGTGC 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1225 GAATAAAATGCTGATGCTCGAAAACGCAGTTTTCTATGTTGCCAGTCCAGAGGCATGTGC 1284
Query 1238 AGCGATTTTGTGGAAGACTTCCAAGGCTGCTCCTGAGGCTGCTGAAAAGCTTAGAATTAC 1297
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1285 AGCGATCTTGTGGAAGACTTCTAAGGCTGCTCCTGAGGCTGCTGAAAAGCTTAGAATTAC 1344
Query 1298 CTCCAAGGAGCTGGTCAAGCTTAATGTAGCTGATGGAATCATTCCTGAACCGCTTGGCGG 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1345 CTCCAAGGAGCTGGTCAAGCTTAATGTAGCTGATGGAATCATTCCTGAACCGCTTGGAGG 1404
Query 1358 GGCCCATGCTGATCCTTCATGGACGTCGCAGCAGATAAAGATTGCTATCAATGAAAACAT 1417
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1405 GGCCCATGCCGATCCTTCATGGACGTCGCAGCAAATAAAGATTGCTATCAATGAAAACAT 1464
Query 1418 GAATGAATTCGGAAAAATGAGTGGGGAGGAGCTCCTGAAGCACAGGATGGCTAAGTACCG 1477
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1465 GAATGAATTCGGAAAAATGAGTGGGGAGGAGCTCCTGAAACACAGGATGGCTAAGTACCG 1524
Query 1478 AAAGATTGGAGTGTTCATAGAAGGTGAAACAATAGAGCCGAGTAGGAAAGTCAACATGAA 1537
||||||||||||||||||||| || ||| |||||||||| ||||||||| ||||||||||
Sbjct 1525 AAAGATTGGAGTGTTCATAGAGGGCGAACCAATAGAGCCAAGTAGGAAAATCAACATGAA 1584
Query 1538 GAAGAGGGAAGCCGTGTTCTCAGATAGCCGGAAGCTGCAGGGGGAGGTTGACAAGCTGAA 1597
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1585 GAAAAGGGAAGCCGTGTTCTCAGATAGCCGGAAGCTGCAGGGTGAGGTTGACAAGCTGAA 1644
Query 1598 GGAGCAGATTCTGAAAGCCAAGGAGACGTCTTCAGAAGACGAGCCTTCGAGTGAAGTTCT 1657
||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 1645 GGAGCAGATTCTGAAAGCCAAGGAGACGTCTACGGAAGCCGAGCCTTCGAGTGAAGTTCT 1704
Query 1658 TAATGAGATGATTGAGAAACTCAAATCCGAGATAGATGACGAGTACACTGAAGCTGCCAT 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1705 TAATGAGATGATTGAGAAACTCAAATCCGAGATAGATGACGAGTACACTGAAGCTGCAAT 1764
Query 1718 TGCAGTAGGTTTGGAGGAGAGACTAACGGCGATGCGCGAAGAGTTCTCGAAAGCAAGTTC 1777
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1765 AGCAGTAGGTTTGGAGGAGAGACTAACGGCAATGCGCGAAGAGTTCTCGAAAGCGAGTTC 1824
Query 1778 AGAGGAGCATCTTATGCACCCGGTTCTGATCGAGAAAATTGAGAAGCTCAAGGAAGAGTT 1837
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1825 AGAAGAGCACCTTATGCACCCGGTTCTGATCGAGAAAATTGAGAAGCTCAAGGAAGAATT 1884
Query 1838 CAATACCCGTTTGATTGACGCGCCTAACTACGAGAGCCTAAAATCTAAGCTTAACATGCT 1897
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1885 CAATACCCGTTTGACTGACGCACCTAACTACGAGAGCCTAAAATCTAAGCTTAACATGCT 1944
Query 1898 GAGGGACTTTTCCAGAGCCAAAGCAGCATCAGAAGCTACTTCATTGAAAAAGGAGATCAA 1957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 TAGGGACTTTTCCAGAGCCAAAGCAGCATCAGAAGCTACTTCATTGAAAAAGGAGATCAA 2004
Query 1958 TAAGCGGTTCCAGGAAGCTGTAGACCGTCCTGAAATTAGAGAAAAGGTTGAGGCAATCAA 2017
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 2005 TAAGCGGTTCCAGGAAGCTGTAGACCGCCCAGAAATTAGAGAAAAGGTCGAGGCAATCAA 2064
Query 2018 AGCTGAGGTCGCGAGCTCAGGAGCTTCATCTTTTGACGAGTTACCTGATGCATTGAAAGA 2077
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2065 AGCTGAGGTCGCGAGCTCAGGAGCTTCTTCTTTTGACGAGTTACCTGATGCACTGAAAGA 2124
Query 2078 AAAAGTTCTGAAGACTAAAGGGGAGGTCGAAGCAGAGATGGCGGGTGTGTTAAAGTCAAT 2137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2125 AAAAGTTCTGAAGACTAAAGGGGAGGTCGAAGCAGAGATGGCGGGTGTGTTAAAGTCAAT 2184
Query 2138 GGGTCTGGAGCTTGATGCTGTGAAACTGAAT-ATGAAGGATCCGGCTGAGCAGACCTTTG 2196
||||||||||||||| ||||| |||| |||| | ||||||| |||||||||||| || ||
Sbjct 2185 GGGTCTGGAGCTTGACGCTGTTAAACAGAATCA-GAAGGATACGGCTGAGCAGATCTATG 2243
Query 2197 CCGCAAACGAAAACCTTCAAGAAAAACTTGAAAAGCTGAACCAAGAAATCACCAACAAGA 2256
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2244 CCGCAAACGAAAACCTTCAAGAAAAACTTGAAAAGCTGAACCAAGAAATCACCAGCAAGA 2303
Query 2257 TTGCAG-AGGTGGTGAGGACACCAGAGATCAAGAGCATGGTCGAGTTGCTGAAAGTGGAA 2315
||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2304 TTG-AGGAGGTGGTGAGGACACCAGAGATCAAGAGCATGGTGGAGTTGCTGAAAGTGGAA 2362
Query 2316 ACCGCAAAGGCGAGCAAAACCCCTGGTGTCACCGAAGCATATCAGAAGATCGAGGCACTT 2375
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2363 ACCGCAAAGGCGAGCAAAACGCCTGGTGTCACCGAAGCATATCAGAAAATCGAGGCACTT 2422
Query 2376 GAGCAGCAGATCAAGCAGAAGATTGCAGAGGCTCTGAACATGTCCGGACTGCAAGAAAAG 2435
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 2423 GAGCAGCAGATCAAGCAGAAGATTGCAGAGGCTCTGAACACGTCCGGACTGCAGGAAAAG 2482
Query 2436 CAAGAGGAGCTGGAAAAGGAGATTGCAGCTGCACGTGAACTAGCTGCAGAGGAATCAGAC 2495
||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2483 CAAGACGAGCTCGAGAAGGAGCTTGCAGCTGCACGTGAACTAGCTGCAGAGGAATCAGAC 2542
Query 2496 GGGAGTGTGAAGGAAGATGACGACGACGACGAAGATAGTTCAGAATCCGGGAAATCGGAG 2555
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2543 GGGAGTGTGAAGGAAGATGATGACGATGACGAAGATAGTTCAGAATCCGGGAAATCGGAG 2602
Query 2556 ATGGTTAACCCCAGCTTCGCCTAAAGCACAAAACAAGACATTGTTTACTCGCAGGATCTT 2615
|||||||||||||||||||||| ||||||||||||||||||||||| | | ||||
Sbjct 2603 ATGGTTAACCCCAGCTTCGCCTGAAGCACAAAACAAGACATTGTTT----G-A---TCTT 2654
Query 2616 GAAGCTCTTTTGATTTCCCTGGTAAAGAGGCTATATCCTCCACGATCTGAAGCAAAGAGA 2675
|||||||||| ||| |||| |||||||||||||| |||||| ||||||||||| ||||
Sbjct 2655 GAAGCTCTTTCGATATCCCCGGTAAAGAGGCTAT--CCTCCATGATCTGAAGCA--GAGA 2710
Query 2676 AACAGATAAACTCCAGTGGAGGAACAGCAACTTAAAGA-CCTTGCTTTC-TCTAGTTTAG 2733
|||||||| |||||||||||||||||||||| | ||||||||| ||||||| ||
Sbjct 2711 ----GATAAACTATAGTGGAGGAACAGCAACTTAAAAAACCTTGCTTTTGTCTAGTT-AG 2765
Query 2734 CTTCAGGAACATGATATCTGGATTGGAACAAGCGTTTGAAGTTAACTTTTGTCTTTGGAT 2793
|||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2766 CTTCTGGAACATGATTTCTGGATTGGAACAAGCGTTTGAAGTTGACTTTTGTCTTTGGAT 2825
Query 2794 TCATTTATGTATTGTTATGTCTTGTTTCGTTAGAACACTAGTTTTTGTCTTTGACATACG 2853
|||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 2826 TCATTTCTGTATTGTTATGTCTTATTTTGTTAGAACACTAGTTTT-GTCTTTGACATACG 2884
Query 2854 T 2854
|
Sbjct 2885 T 2885
> AT2G38260.1 | Symbols: | pseudogene, similar to carboxyl transferase
alpha subunit, similar to GB:U34392, however, a substitution
at base 93910 in our sequence causes a stop codon
in the coding region. We sequenced four clones in that region
which all confirm the substitution.; blastp match of 73%
identity and 2.6e-115 P-value to GP|9621818|gb|AAF89548.1|AF165158_1|AF165158
carboxyl transferase alpha subunit {Glycine
max} | chr2:16025429-16028594 REVERSE LENGTH=3166
Length=3166
Score = 267 bits (144), Expect = 6e-70
Identities = 160/167 (96%), Gaps = 3/167 (2%)
Strand=Plus/Plus
Query 790 AGTTTATGGAGCTTCATGGAGACCGAGCGGGGTATGATGACCCTGCAATTGTGACCGGTA 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1695 AGTTTATGGAGCTTCATGGAGACCGAGCGGGGTATGATGACCCTGCAATTGTGACGGGTA 1754
Query 850 TTGGAACCATCGATGGAAAACGTTACATGTTCATAGGTCACCAGAAAGGTAGAAACACCA 909
|||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 TTGGAACCATTGATG-AA--CGTTACATGTTCATAGGTCACCAGAAAGGTAGAAACACCA 1811
Query 910 AAGAAAATATAATGCGTAACTTTGGTATGCCTACTCCTCACGGATAT 956
|||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1812 AAGAAAATATAATGCGGAACTTTGGTATGCCTACTCCTCACGGGTAT 1858
Score = 252 bits (136), Expect = 2e-65
Identities = 150/157 (96%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 1066 AGGGTGAAGCGATTGCCAACAATCTGAGGACGATGTTTGGCCTGAAAGTGCCAATTCTTT 1125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 AGGGTGAAGCAATTGCCAACAATCTGAGGACGATGTTTGGCCTGAAAGTGCCAATTCTTT 2204
Query 1126 CTATTGTCATTGGGGAAGGTGGTTCTGGTGGTGCTTTAGCCATTGGCTGTGCTAATAAAA 1185
|||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 2205 CTATTGTCGTTGGGGAAGGTGGTTCTGGTGGTGCCCTAGCCATTGGCTGTGATAATGAAA 2264
Query 1186 TGCTGATGCTCGAAAACGCAGTTTTCTATGTTGCCAG 1222
|||||||||||||||| ||||||||||||||||||||
Sbjct 2265 TGCTGATGCTCGAAAATGCAGTTTTCTATGTTGCCAG 2301
Score = 185 bits (100), Expect = 2e-45
Identities = 114/121 (94%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 948 CACGGATATAGGAAAGCACTTCGGATGATGTATTATGCAGACCATCACGGTTTTCCTATC 1007
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1944 CACAGATAGAGGAAAGCACTTCGGATGATGTATTATGCAGACCATCACGGTTTTCCAATC 2003
Query 1008 GTGACATTCATCGACACTCCTGGAGCCTATGCAGACCTTAAATCCGAGGAACTCGGACAG 1067
|| | ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2004 GTAAAATTCATCGACATTCCTGGAGCCTATGCAGAACTTAAATCCGAGGAACTCGGACAG 2063
Query 1068 G 1068
|
Sbjct 2064 G 2064
Score = 161 bits (87), Expect = 3e-38
Identities = 105/113 (93%), Gaps = 3/113 (3%)
Strand=Plus/Plus
Query 1422 GAATTCGGAAAAATGAGT--GG-GGAGGAGCTCCTGAAGCACAGGATGGCTAAGTACCGA 1478
||||| || ||||||||| || |||||||||||||||||| ||||||||||||||| ||
Sbjct 2828 GAATTTGGGAAAATGAGTGGGGAGGAGGAGCTCCTGAAGCATAGGATGGCTAAGTACAGA 2887
Query 1479 AAGATTGGAGTGTTCATAGAAGGTGAAACAATAGAGCCGAGTAGGAAAGTCAA 1531
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2888 AAGATTGGAGTGTTCATAGAAGGTGAAACAATAGAGCCTAGTAGGAAAGTCAA 2940
Score = 158 bits (85), Expect = 4e-37
Identities = 107/117 (91%), Gaps = 4/117 (3%)
Strand=Plus/Plus
Query 681 CAGGCA-CTG-AAAGATCTTTACACGCATCTCACTCCAATACAACGTGTGAACATTGCGC 738
|||||| | | ||| ||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 1490 CAGGCACCGGAAAAAATCTTTACA-GCATCTCACTCTGATACAACGTGTGAACATTGGGC 1548
Query 739 GCCATCCCAACCGACCTACTTTCCTTGATCATATACATAACATCACTGACAAG-TTT 794
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1549 GTCATCCCAACCGACCTACTTTCCTTGATCATATACATAACATCACTGACAAGGTTT 1605
Score = 135 bits (73), Expect = 2e-30
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1344 GAACCGCTTGGCGGGGCCCATGCTGATCCTTCATGGACGTCGCAGCAGATAAAGATTGCT 1403
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2679 GAACCGTTTGGTGGGGCCCATGCTGATCCTTCATGGACGTCGCAGCAGATAAAGATTGCT 2738
Query 1404 ATCAATGAAAACATGAATG 1422
|||||||||||||||||||
Sbjct 2739 ATCAATGAAAACATGAATG 2757
Score = 122 bits (66), Expect = 1e-26
Identities = 73/76 (96%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 1273 AGGCTGCTGAAAAGCTTAGAATTACCTCCAAGGAGCTGGTCAAGCTTAATGTAGCTGATG 1332
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2513 AGGCTGCTGAAAAGCATAGAATTACCTCCAAGGAGCTGGTCAAGCTTAATGTAGCCGATG 2572
Query 1333 GAATCATTCCTG-AAC 1347
|||||||||||| |||
Sbjct 2573 GAATCATTCCTGTAAC 2588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143326956151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5