BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482813
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38060.1 | Symbols: PHT4;2 | phosphate transporter 4;2 | chr... 2320 0.0
> AT2G38060.1 | Symbols: PHT4;2 | phosphate transporter 4;2 | chr2:15922557-15925623
REVERSE LENGTH=1709
Length=1709
Score = 2320 bits (1256), Expect = 0.0
Identities = 1465/1563 (94%), Gaps = 25/1563 (2%)
Strand=Plus/Plus
Query 18 AGGATCTCTAAAACTTCTGCAACATTCGTCATGTTCATTGAGTTTCCATCGGAATCCAAT 77
|||||| || |||| |||||| ||||| |||||||||| |||||||| ||||||||| ||
Sbjct 12 AGGATCCCTGAAACCTCTGCACCATTCCTCATGTTCATCGAGTTTCCCTCGGAATCCGAT 71
Query 78 CG-CAACCAAGAAAGCCCTTC-TGCGTTTCGGGTTTG-GTC--CCCGGAAAAATCAGATT 132
|| |||| ||||||||||| || |||| | ||||| || |||||||||| ||||||
Sbjct 72 CGTAAACC-GGAAAGCCCTTCTTG-GTTTTGTGTTTGATTCTGCCCGGAAAAACCAGATT 129
Query 133 CGATGTGATAATTTACTTTCTTCATCGGAAAGCGATGGGAAGAGAAGAGGTGAGGCGGTG 192
|||||||| ||||||| | |||||||||||||||||||||||||||| |
Sbjct 130 CGATGTGAGAATTTACGATATTCATCGGAAAGCGATGGGAAGAGAAGA----A------- 178
Query 193 GTGGCGGCGGCGAAGAAGAGGAATCAGTCGCCGGAAAGATGTGCGGCGGAGGGAAG-ACT 251
| ||||||||||||||||||||||| || ||||||||||||||||||||||| || |||
Sbjct 179 AT-GCGGCGGCGAAGAAGAGGAATCAATCCCCGGAAAGATGTGCGGCGGAGGG-AGTACT 236
Query 252 GATCGGAGGAGGAGCGTCGGAGGCGATTACGGAGGTGAGGACGATGATGCCTGAGAGGAT 311
|| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 237 GACCGGAGGAGGGGGGTCGGAGGCGATTGCGGAGGTGAGGACGATGATGCCTGAGAGGAT 296
Query 312 TAAGGTAGTGATATTGACCGCGTGCATGATGTGTCTGTGTAATGCCGACAGAGTTGTTAT 371
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 297 TAAGGTAGTGATATTGACGGCGTGCATGATGTGTCTATGTAACGCCGACAGAGTTGTTAT 356
Query 372 GTCCGTCGCGGTGGTTCCACTCGCCGACAAGCTTGGCTGGTCGAGTTCTTTCCTAGGGGT 431
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 357 GTCCGTCGCGGTGGTTCCACTCGCCGATAAGCTTGGCTGGTCGAGTTCTTTCTTAGGGGT 416
Query 432 AGTTCAGTCCTCCTTCCTATGGGGTTACATATTTTCATCGGTTATCGGAGGGGCATTGGT 491
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 417 AGTTCAGTCCTCCTTCCTATGGGGTTACATTTTTTCATCCGTTATCGGAGGGGCATTGGT 476
Query 492 GGATCGGTATGGAGGGAAAAGAGTATTGGCTTGGGGAGTGGCATTGTGGTCCTTAGCCAC 551
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 477 GGATCGGTATGGAGGAAAAAGAGTGTTGGCTTGGGGTGTGGCATTGTGGTCCTTAGCCAC 536
Query 552 TCTACTTACTCCTTGGGCAGCTGCCCACTCGACCTTTGCCTTATTGTGTGTCCGCGCCTT 611
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 537 TCTACTCACTCCTTGGGCAGCTGCACACTCGACCTTAGCCTTATTGTGTGTCCGCGCCTT 596
Query 612 TTTTGGCCTCGCTGAAGGTGTTGCATTGCCCTCTATGACGACCCTTCTCTCTCGGTGGTT 671
|||||||||||||||||| |||||| ||||||| ||||| ||||| ||||||||||||||
Sbjct 597 TTTTGGCCTCGCTGAAGGCGTTGCAATGCCCTCCATGACCACCCTACTCTCTCGGTGGTT 656
Query 672 CCCAACGGATGAACGAGCGAGTGCGGTTGGTATATCTATGGCCGGGTTTCATATGGGAAA 731
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 TCCAATGGATGAACGAGCGAGTGCGGTTGGTATATCTATGGCCGGGTTTCACATGGGAAA 716
Query 732 TGTCGTGGGACTTCTGTTGACGCCACTCTTGTTATCTTCCATAGGAATCTCTGGTCCATT 791
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 717 TGTTGTGGGACTTCTGTTGACGCCACTCATGTTATCTTCCATAGGAATCTCTGGTCCATT 776
Query 792 CATTCTTTTTGCATCCTTAGGTCTATTGTGGGTATCTACTTGGTCAAGCGGCGTTACAAA 851
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 777 TATTCTTTTTGCATCCTTAGGTCTATTGTGGGTATCCACTTGGTCAAGCGGAGTTACAAA 836
Query 852 CAACCCTCAGGACAGTCCTTTCATCACTAGGTCAGAACTCAGGCTTATCCAGGCTGGAAA 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CAACCCTCAGGACAGTCCTTTCATCACTAGGTCAGAACTCAGGCTTATCCAGGCTGGAAA 896
Query 912 ACCGGTTCAACCATCAACCAATTCGACGAAACCAAACCCATCTTTACGACTTCTTTTGTC 971
||| |||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct 897 ACCAGTTCAACCGTCAACCATTTCGCCGAAACCAAACCCATCTTTGCGACTTCTTTTGTC 956
Query 972 GAAATTGCCTACTTGGGCGATCATTTTAGCTAATGTGACTAACAACTGGGGATACTTTGT 1031
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 957 GAAATTGCCTACTTGGGCGATCATTTTTGCTAATGTGACTAACAACTGGGGATACTTTGT 1016
Query 1032 TCTTCTCTCATGGATGCCTGTTTACTTCCAGACGGTGTTTAATGTAAATTTGAAGCAAGC 1091
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1017 TCTTCTCTCATGGATGCCTGTTTACTTCCAGACGGTGTTTAATGTGAATTTGAAGCAAGC 1076
Query 1092 AGCTTGGTTTAGCGCTCTTCCATGGGCGACAATGGCGATCTCAGGTTACTATGCAGGTGC 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1077 AGCTTGGTTTAGCGCTCTTCCATGGGCGACAATGGCGATCTCAGGTTACTATGCAGGAGC 1136
Query 1152 AGCATCAGACTTCTTGATCAGAACTGGTCACTCTGTAACCTCAGTCCGAAAGATCATGCA 1211
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1137 AGCATCGGACTTCTTGATAAGAACTGGTCACTCTGTAACCTCAGTACGAAAGATCATGCA 1196
Query 1212 GTCTATCGGATTTATGGGTCCTGGGCTATCTCTGCTCTGCCTCAACTTCGCTAAA-TCGC 1270
||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||
Sbjct 1197 ATCTATTGGATTTATGGGTCCCGGGCTGTCTCTGCTCTGCCTCAACTTCGC-AAAGTCGC 1255
Query 1271 CTTCTTGTGCAGCAGTTTTCATGACCATTGCATTGAGCTTGAGTTCCTTTAGCCAAGCTG 1330
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CTTCTTGTGCAGCGGTTTTCATGACCATTGCATTGAGCTTGAGTTCCTTTAGCCAAGCTG 1315
Query 1331 GGTTTCTCCTCAATATGCAAGATATCGCACCGCAATATGCTGGTTTCTTGCACGGTATTT 1390
| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1316 GATTTCTCCTCAATATGCAAGACATCGCACCGCAATATGCTGGTTTCCTGCACGGTATTT 1375
Query 1391 CGAATTGTGCGGGTACGTTGGCTGCGATCGTAAGTACAATAGGGACGGGATATTTTGTGC 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CGAATTGTGCGGGTACGTTGGCTGCGATCGTAAGTACAATAGGGACGGGATATTTTGTGC 1435
Query 1451 AGTGGCTCGGCTCTTTTCAGGCGTTCTTGACGGTAACGGCGTTTCTTTACTTTGCAACCA 1510
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1436 AGTGGCTCGGCTCTTTTCAGGCGTTCTTGACGGTTACGGCCTTTCTTTACTTTGCAACCA 1495
Query 1511 CCGTGTTTTGGATCCTCTTTGCAACCGGAGAACGAGTCTTCTAGATCCAAAA-GACTCTC 1569
||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1496 CCGTGTTTTGGCTCCTCTTTGCAACCGGAGAACGAGTCTTCTAGATCCAAAACG-CTCTC 1554
Query 1570 CTT 1572
|||
Sbjct 1555 CTT 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5