BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482814
Length=2170
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38070.1 | Symbols: | Protein of unknown function (DUF740) ... 3092 0.0
> AT2G38070.1 | Symbols: | Protein of unknown function (DUF740)
| chr2:15928591-15930794 FORWARD LENGTH=2204
Length=2204
Score = 3092 bits (1674), Expect = 0.0
Identities = 2047/2218 (92%), Gaps = 62/2218 (3%)
Strand=Plus/Plus
Query 1 CTCTTTCCTTTGTCACTATCCGTTGAGAACCCAAACGG--ctctctcttctctga----- 53
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1 CTCTTTCCTTTGTCACTATCCGTTGAGAACCCAAACGGCTCTCTCTCTTGTCTGACTCTC 60
Query 54 ---ct-t-tctctctcgagatcggtcgacatttttctctg-aagctctcttctatctttA 107
|| | |||||||| |||||||||| | ||||||||| || ||||||||| ||||||
Sbjct 61 TCTCTCTCTCTCTCTCTCGATCGGTCGA-AATTTTCTCTGTAA-CTCTCTTCTCTCTTTA 118
Query 108 CGAATCCCGATATGAGCCACGGGTGGTTATGGTTATGAATAATCCTGCAAACAACAACCC 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGAATCCCGATATGAGCCACGGGTGGTTATGGTTATGAATAATCCTGCAAACAACAACCC 178
Query 168 AGTTGCAGCG--TT----GTCAGCCGTAGCTTTAGCTCCGCCGCCACATCCGCCGCAGCC 221
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGTAGCAGCGTCTTCAGCGTCAGCCGTAGCTTTAGCTCCGCCGCCACATCCGCCGCAGCC 238
Query 222 TCACCGTCCTTCCACCTCCTGTGATCGTCACCCGGACGAAAGATTCACCGGATTTTGCCC 281
|||||||||||| || |||||||||||||||||||| || | |||||||||||||||||
Sbjct 239 TCACCGTCCTTCTACTTCCTGTGATCGTCACCCGGATGAGCGTTTCACCGGATTTTGCCC 298
Query 282 TTCTTGTCTCTTCGACCGTCTCTCTGTTCTAGACATCACCGG-----A-AAGAACGCCGT 335
|||||||||||| ||||||||||||||||||||||||||||| | || ||||||||
Sbjct 299 TTCTTGTCTCTTTGACCGTCTCTCTGTTCTAGACATCACCGGAAAAAACAACAACGCCGT 358
Query 336 CGCGTCTTCTTCAAAGAAACCACCGTCGTCTTCCGCCGCTCTTAAAGCAATCTTCAAGCC 395
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 359 CGCGTCTTCTTCTAAGAAACCACCGTCTTCTTCCGCCGCTCTTAAAGCAATCTTCAAACC 418
Query 396 CTCTTCCTCCTCCGGGTCGTTGTTCCCGGAACTTCGGAGGACGAAATCGTTTTCGGCGA- 454
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |
Sbjct 419 CTCTTCCTCCTCCGGTTCGTTCTTCCCGGAACTTCGGAGGACGAAATCGTTTTCAGC-AT 477
Query 455 CAAAGGCTGAAGCTTTTTCTTTGGGTGCGTTTGAGCCACAGAGAAGATCCTGTGATGTTA 514
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 478 CAAAGGCTGAAGCTTTTTCTCTAGGTGCGTTTGAGCCACAGAGAAGATCCTGTGATGTTA 537
Query 515 GAGTTAGGAACACTCTCTGGTCTCTGTTTCACGAAGACGCCGAGCATAATTCTCAAACCA 574
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGGTTAGGAACACTCTTTGGTCTCTGTTTCACGAAGACGCCGAGCATAATTCTCAAACCA 597
Query 575 AAGAGGGTTTATCAGTAAATTGCAGTGAGATTGATCTCGAACGCATCAATTCCATTGTAA 634
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 598 AAGAGGGTTTATCAGTAAATTGCAGTGAGATTGATCTCGAACGCATCAATTCAATAGTAA 657
Query 635 AGTCGCCTGTTTTCGAGGAGGAAACT-ATAATTGAAAGTGAGCAAGACAACGAGGAAGAC 693
|||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 658 AGTCTCCTGTTTTCGAGGAGGAAACTGA-AATTGAAAGTGAGCAAGACAACGAGAAAGAC 716
Query 694 ATAAATTTTGGGACTTTCAAAGAACCCAGAAGTGTAATCGACGAAATCGTTgaagaagaa 753
||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATAAAGTTTGAGACTTTCAAGGAACCCAGAAGTGTAATCGACGAAATCGTTGAAGAAGAA 776
Query 754 gaagaagaggagacgaagaaagTTGAGGACTTTGA-AATGGAAATTAATCCTCAG---AC 809
||||||||||| ||||||||||||||||||||| | |||||| ||||||| ||| ||
Sbjct 777 GAAGAAGAGGAAACGAAGAAAGTTGAGGACTTT-ACAATGGAGTTTAATCCACAGACAAC 835
Query 810 GACGAAGAAGACGAACAGAGACTTCAAAGAGATTGCAGGGAGTTTCTGGTCGGCGGCGTC 869
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 836 GGCGAAGAAGACGAACAGAGACTTCAAAGAGATTGCAGGGAGTTTCTGGTCAGCGGCGTC 895
Query 870 AGTATTCAGCAAGAAATTGCAGAAATGGCGACAAAAGCAGAAGCTTAAGAAGCATAGAAC 929
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 896 AGTATTCAGCAAGAAATTGCAGAAATGGAGACAAAAGCAGAAGCTTAAGAAGCATAGAAC 955
Query 930 CGG------C---GCCGGATCCGCTGCGTTACCGGTGGAGAAGTCAATTGGGAGACAGCT 980
||| | ||||||||| |||| ||||||||||||||| |||| |||||||| ||
Sbjct 956 CGGAAATCTCGGAGCCGGATCCTCTGCTTTACCGGTGGAGAAGGCAATCGGGAGACAACT 1015
Query 981 TAGAGATACTCAATCTGAAATCGCTGAGTATGGTTACGGACGGAGATCGTGTGATACAGA 1040
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1016 TAGAGATACTCAATCTGAAATCGCTGAGTATGGTTACGGAAGGAGATCGTGTGATACAGA 1075
Query 1041 TCCAAGATTCTCAATCGACGCCGGAAGATTCTCGCTTGACGCCGGTAGGGTTTCTGTGGA 1100
||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| || ||
Sbjct 1076 TCCAAGATTCTCAATTGACGCTGGAAGATTCTCGCTTGATGCTGGTAGGGTTTCGGTTGA 1135
Query 1101 CGACCCTCGTTACTCTTTTGAGGAGCCACGAGCTTCTTGGGATGGATATTTGATCGGAAG 1160
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1136 TGACCCTCGTTACTCTTTTGAGGAGCCACGCGCTTCGTGGGATGGATATTTGATTGGAAG 1195
Query 1161 AACGGCTGCTCCGCCGCGAATGCCGTCGATGTTATCTGTAGTGGAAGATTCTCCGGTTCG 1220
| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AGCTGCTGCTCCGATGCGAATGCCGTCGATGTTATCTGTAGTGGAAGATTCTCCGGTTCG 1255
Query 1221 TAATCATGTTTTCAGGTCAGATACTCAGATTCCGGTGGAAAAGCCACCACCAGTACCAGG 1280
||||||||| | ||||||||||||| ||||||||||||||| |||||| |||| || |
Sbjct 1256 GAATCATGTTCACCGGTCAGATACTCACATTCCGGTGGAAAAGTCACCACAAGTATCA-G 1314
Query 1281 ACG-TGTAAATGAGGAGATTGTTCCTGGTGGATCTGCACAGACCCGAGAGTACTACTTAG 1339
| | ||| | ||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1315 AAGCTGTGATTGATGAGATTGTTCCTGGTGGATCTGCACAGACCAGAGAGTATTACTTAG 1374
Query 1340 A--C-TCATCTTCACGACGGAGGAAGAGCCTTGACCGTTCTAGCTCCACTAGGAAGATAT 1396
| | |||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1375 ACTCATCATCTTCACGAAGGAGGAAGAGCCTTGACCGTTCTAGCTCCACTAGGAAGTTAT 1434
Query 1397 CAGCCTCTGTCATGGCGGAAATTGATGAACTAAAACTGACTCAAGACAGAGAGGCTGAAG 1456
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1435 CAGCCTCTGTCATGGCTGAAATTGATGAACTAAAGCTGACTCAAGACAGAGAGGCTAAAG 1494
Query 1457 ACTTGATTTCACATTCGAATTCACTGAGAGACGATTGTTGCTCAGTTGAGAACAACT-TC 1515
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1495 ACTTGGTTTCACATTCGAATTCACTGAGAGACGATTGTTGCTCTGTTGAGAACAACTAT- 1553
Query 1516 GAGATGGGTGTTAGAGACAATGCAGGGACTATAGAATGCAACAAGAAGAGGACGAAGAAA 1575
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1554 GAGATGGGTGTTAGAGAAAATGTAGGGACTATAGAATGCAACAAGAAGAGGACGAAGAAA 1613
Query 1576 TCTCGATGGAGTTGGAACATATTCGGGCTGCTTCATCGGAAAAACGGGAACAAATACgaa 1635
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct 1614 TCTCGATGGAGTTGGAACATATTCGGGTTGCTTCATCGAAAAAACGGGAACAAATACG-A 1672
Query 1636 gaagaagaagaacgaagaagCGGTGTGGATAGAACGTTTTCGGGATCGTGGAATGTAGAA 1695
| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1673 G--GAAGAAGAAAGAAGAAGCGGTGTGGATAGAACGTTTTCGGGGTCGTGGAATGTAGAA 1730
Query 1696 TCGAGAAACGGGTTTGATCCGAAGATGATTAGGAGCAATAGTAGTGTGAGTTGGAGAAGT 1755
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CCGAGGAACGGGTTTGATCCGAAGATGATTAGGAGCAATAGTAGTGTGAGTTGGAGAAGT 1790
Query 1756 TCTGGTACCACAGGAGGAGGGTAT-CAACGGAATAGTGTGGATGGATACATTAGTGGGAA 1814
|| || ||||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1791 TCCGGAACCACTGGAGGAGGGT-TGCAACGGAATAGTGTGGATGGATACATTAGTGGGAA 1849
Query 1815 GAAGAAAGTTAGTAAGGCTGAGAATGGAATGCTCAAGTTTTACTTGACACCGGGTAAAGG 1874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 GAAGAAAGTTAGTAAGGCTGAGAATGGAATGCTCAAGTTTTACTTGACACCGGGTAAAGG 1909
Query 1875 AAGGCGAAGAGGAAGCGGCAATTCGGCCGCACCGACAAACCGGCCGGTACCGGGTTCTCA 1934
||||||||||||||||||||||||| |||||||||||| |||||| || |||| ||||||
Sbjct 1910 AAGGCGAAGAGGAAGCGGCAATTCGACCGCACCGACAAGCCGGCCTGTTCCGGCTTCTCA 1969
Query 1935 ACCGTTTGGTAGTAGAAATGTTATGAACTTTTACTGACAACATTGTAATGAGCTCGAATC 1994
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1970 ACCTTTTGGTAGTAGAAATGTTATGAACTTTTACTAACAACATTGTAATGAGCTCGAGTC 2029
Query 1995 TTCTCTTTAGATGTAGTTGGAATAAGTGTGATGATGAAGTTGCATTGACAGAAAATGTAC 2054
|||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 2030 TTCTTTTTAGATGTAGTTGGAATAA-TGTG-TGATGAAGTTGCATTGACAGAAAATGTTC 2087
Query 2055 AAAGAttttttttttttttttGGGTTCAATCTGATTCTTGTATGGGGATTTGATT--GCT 2112
|||||||| | |||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 2088 AAAGATTTACATATTTTTTTTGGGTTCAATCTGATTCTTGTGTTGGGATTTGATTTTGC- 2146
Query 2113 CAAATTTAGAAACTTGTAGTTCAAAGTGTTAATCAATCTTCTTTGGTCATGAATGTAT 2170
||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2147 CAATTTTAGAAATTTGTAGTTCAAAGTGTTAATCCATCTTCTTTGGTCATGAATGTAT 2204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107629968480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5