BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482815
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38080.1 | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Di... 3114 0.0
> AT2G38080.1 | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol
oxidase family protein | chr2:15934460-15937616 FORWARD
LENGTH=2021
Length=2021
Score = 3114 bits (1686), Expect = 0.0
Identities = 1905/2011 (95%), Gaps = 14/2011 (1%)
Strand=Plus/Plus
Query 2 aaacagagagaaaaagactaaaaacacagcttaagaagaagaagagatagagaaag-cga 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 4 AAACAGAGAGAAAAAGACTAAAAACACAGTTTAAGAAGAAGGAGAGATAGAGAGAGAAGA 63
Query 61 g-aaga-a-agagagagaTGGGG--T-ATATGGTTTGGTTTCTATTTCTTATATCCTTCT 114
| |||| | |||| ||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 64 GAAAGATAGAGAGGGAGATGGGGTCTCATATGGTTTGGTTTCTATTTCTTGTATCCTTCT 123
Query 115 TCTTTGTGTTCCCAGCTCCATCCGAGAGCATGATTCGCCATTACAAGTTTAACGTTGTGA 174
||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
Sbjct 124 TCTCTGTGTTCCCAGCTCCATCTGAGAGCATGGTTCGCCACTACAAGTTTAACGTTGTAA 183
Query 175 TGAAGAACACAACAAGACTATGCTCAAGCAAGCCAATCGTGACCGTCAACGGTAGATATC 234
|||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 184 TGAAGAACGTGACTAGATTATGCTCAAGCAAGCCAACCGTGACCGTCAACGGTAGATATC 243
Query 235 CAGGTCCCACAATCTACGCACGAGAAGATGACACGTTGCTCATCAAAGTCGTTAATCACG 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CAGGTCCCACAATCTACGCACGAGAAGATGACACGTTGCTCATCAAAGTCGTTAATCACG 303
Query 295 TCAAGTACAACCTCTCCATCCACTGGCACGGTGTGAGACAAGTGAGAACGGGATGGGCTG 354
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TCAAGTACAACGTCTCCATCCACTGGCACGGTGTGAGACAAGTGAGAACGGGATGGGCTG 363
Query 355 ATGGGCCTGCTTACATAACTCAGTGCCCGATCCAGCCTGGTCAAGTCTACACATACAATT 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 364 ATGGGCCTGCTTACATAACTCAGTGCCCGATCCAGCCTGGTCAAGTCTACACATACAACT 423
Query 415 ATACCTTGACTGGCCAACGAGGAACGCTTTGGTGGCATGCTCATATCCTCTGGCTCCGAG 474
| || ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 424 ACACTTTGACCGGCCAACGCGGAACGCTCTGGTGGCACGCTCATATCCTCTGGCTCCGAG 483
Query 475 CAACGGTTTACGGTGCGTTGGTCATCCTTCCCAAACGCGGTGTTCCCTATCCTTTCCCCA 534
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CCACTGTTTACGGTGCATTGGTCATCCTTCCCAAACGCGGTGTTCCCTATCCTTTCCCCA 543
Query 535 AACCCGACCATGAGAAAGTCATCGTTCTAGGTGAATGGTGGAAATCGGATACCGAAAACA 594
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 544 AACCCGACAATGAGAAAGTCATCGTTCTAGGTGAATGGTGGAAATCGGATACTGAAAATA 603
Query 595 TCATTAACGAGGCGCTTAAGTCTGGATTAGCCCCTAATGTCTCGGACGCTCACATGATCA 654
| ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 604 TTATTAATGAGGCGCTTAAGTCTGGATTAGCCCCTAATGTCTCTGACTCTCACATGATCA 663
Query 655 ACGGACACCCAGGCCCTGTTAAAAATTGTCCATCTCAAGGTTACAAACTGTCGGTAGAGA 714
|||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 664 ACGGACACCCAGGCCCAGTTAGAAACTGTCCATCTCAAGGTTACAAACTGTCAGTAGAGA 723
Query 715 ATGGCAAAACCTATCTTCTACGACTAGTCAATGCTGCACTTAATGAAGAGCTCTTTTTCA 774
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 724 ATGGCAAAACCTATCTGCTACGACTAGTCAACGCTGCACTTAATGAAGAACTCTTTTTCA 783
Query 775 AAGTCGCCGGCCATATTTTCACGGTGGTCGAAGTCGACGCGGTCTACGTTAAACCGTTTA 834
|||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| |
Sbjct 784 AAGTCGCCGGCCATATTTTCACGGTGGTAGAAGTAGACGCAGTCTATGTTAAACCGTTCA 843
Query 835 AGACCGACACCGTCCTTATAGCCCCCGGTCAAACCACCAACGTCCTCCTAACCGCCTCAA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGACCGACACCGTCCTTATAGCCCCCGGTCAAACCACCAACGTCCTCCTAACCGCCTCAA 903
Query 895 AATCTGCCGGGAAATACCTTGTAACGGCTTCTCCTTTCATGGACGCCCCAATCGCTGTGG 954
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 904 AATCCGCCGGGAAATACCTTGTAACCGCTTCTCCTTTCATGGACGCCCCAATCGCGGTGG 963
Query 955 ACAACGTAACCGCCACCGCAACCGTTCATTACTCCGGAACACTCTCCTCCTCCCCAACAA 1014
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 964 ACAACGTAACCGCCACCGCAACTGTTCATTACTCGGGAACACTCTCCTCCTCCCCAACAA 1023
Query 1015 TCCTCACCCTCCCTCCGCCGCAAAACGCTACTTCCATCGCCAACAACTTCACAAAGTCTC 1074
|||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1024 TCCTCACCCTTCCTCCCCCGCAAAACGCTACTTCCATAGCCAACAACTTCACAAACTCTC 1083
Query 1075 TTCGTAGTCTCAACTCCAAGAAGTACCCTGCCCTTGTCCCGACCACCATCGACCACCACC 1134
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1084 TTCGTAGTCTCAACTCCAAGAAGTACCCTGCTCTTGTCCCGACCACCATCGACCACCACC 1143
Query 1135 TCTTCTTCACCGTCGGTCTTGGGCTAAACGCATGCCCTACTTGCAAGGCCGGAAACGGAA 1194
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TCTTCTTCACCGTCGGCCTTGGGCTAAACGCATGCCCTACTTGCAAGGCCGGAAACGGAA 1203
Query 1195 GCCGTGTCGTGGCCAGCATCAACAATGTAACCTTCATTATGCCCAAAACCGCTTTGCTCC 1254
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1204 GCCGTGTCGTGGCTAGCATCAACAATGTAACCTTCATTATGCCTAAAACCGCTTTGCTCC 1263
Query 1255 CAGCTCATTACTTCAACACAAGTGGAGTTTTCACGACGGATTTTCCTAAAAACCCACCAC 1314
| ||||||||||||||||||||||||||||||||||| || ||||| || || |||||||
Sbjct 1264 CGGCTCATTACTTCAACACAAGTGGAGTTTTCACGACAGACTTTCCCAAGAATCCACCAC 1323
Query 1315 ACGTTTTTAACTACAGCGGAGGATCAGTCACGAACATGGCCACAGAAACCGGCACCAGGC 1374
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1324 ACGTTTTCAACTACAGCGGAGGATCAGTCACGAACATGGCCACAGAAACCGGCACAAGGC 1383
Query 1375 TATACAAGCTACCGTACAACGCCACGGTTCAGCTGGTCCTCCAAGATACTGGCGTCATAT 1434
| |||||||||||||| |||||||| |||||||| ||||| |||||||| |||||||||
Sbjct 1384 TCTACAAGCTACCGTATAACGCCACTGTTCAGCTTGTCCTTCAAGATACCGGCGTCATAG 1443
Query 1435 CGCCTGAGAACCATCCAGTGCATCTTCACGGTTTTAACTTTTTCGAAGTCGGTCGTGGAT 1494
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1444 CGCCAGAGAACCATCCAGTACATCTTCACGGTTTTAACTTTTTTGAAGTCGGTCGTGGAT 1503
Query 1495 TAGGTAACTTCAACTCCACGAAAGACCCAAAAAACTTCAACTTGATCGATCCGGTTGAGA 1554
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 1504 TAGGTAACTTCAACTCCACGAAAGACCCAAAAAACTTCAATTTGGTAGATCCGGTTGAGA 1563
Query 1555 GGAACACAATCGGAGTTCCATCTGGTGGATGGGTCGTCATCAGATTCAGAGCAGATAATC 1614
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1564 GGAACACAATCGGAGTTCCATCCGGTGGATGGGTCGTCATCAGATTCAGAGCAGATAATC 1623
Query 1615 CCGGGGTTTGGTTCATGCATTGTCACTTGGAGGTACACACGACGTGGGGATTAAAGATGG 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 CCGGGGTTTGGTTCATGCATTGTCACTTGGAGGTACACACGACGTGGGGATTAAAGATGG 1683
Query 1675 CTTTCTTGGTGGAGAACGGCAAAGGACCCAATCAGTCGATTTTGCCGCCGCCTAAGGATC 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 CTTTCTTGGTGGAGAACGGCAAAGGACCCAATCAGTCGATTTTGCCGCCGCCTAAGGATC 1743
Query 1735 TTCCCAAGTGTTAAGTCCTGCAACTAAACAAGGCGACATATCAACATCACGCCACGTCCA 1794
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1744 TTCCCAAGTGCTAAGTCCTGCAACTAAATAGGGCGACATATCAACATCACGCCACGTCCA 1803
Query 1795 AGAAGACTAATGAGTGGTGAATTAATGCGTGGATTTGGTTAACAAATTGTAtttttttGA 1854
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1804 AGAAGACTAATGAGTGGTGATTTAATGCGTGGATTTGGCTAACAAATTGTATTTTTTTGA 1863
Query 1855 GCAAAGCAAAAGGTTCGAttttttt-GCTCATGTCAAAAGTTTGAATAATGGAGaaaaaa 1913
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1864 GCAAAGCAAAAGGTTCGGTTTTTTTTGCTCATGTCAAAAGTTTGAATAATGGAGAAAAAA 1923
Query 1914 aGAGCACTGTATTATAATAAtttttttttATCATGATATTCAAATTCCATTCATATTTT- 1972
||||| |||||||||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 1924 -GAGCATTGTATTATAATAATTTGTTTTCAT--T-ATATTCAAATTCCATTCATATTTTT 1979
Query 1973 -ATTATTGTCTCTCACACACCTCTTATATGG 2002
|||||||||||| |||||||||||||||||
Sbjct 1980 TATTATTGTCTCTAACACACCTCTTATATGG 2010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99346878555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5