BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482816
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38090.1 | Symbols: | Duplicated homeodomain-like superfami... 2172 0.0
AT5G01200.1 | Symbols: | Duplicated homeodomain-like superfami... 206 8e-52
> AT2G38090.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr2:15944711-15947085 FORWARD LENGTH=1774
Length=1774
Score = 2172 bits (1176), Expect = 0.0
Identities = 1452/1576 (92%), Gaps = 56/1576 (4%)
Strand=Plus/Plus
Query 1 CTGTTTCATATTCAtctctctcccatctct--ctctatctctcctctctcgc-tctc-CC 56
|||||||||||||||||||||||| ||||| |||||| ||| ||||||| | | || |
Sbjct 1 CTGTTTCATATTCATCTCTCTCCCCTCTCTCCCTCTATATCT-CTCTCTCCCTTTTCGAC 59
Query 57 TTTTCGA-CTTGAG-CGTTTGGGagaaagaagaagaag-a-aaaaagGTTGGATTTTGTT 112
|| || ||| | | ||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 60 -TTGAGAGTTTGGGTCCTTTGGGAGAAAGAAGAAGAAGAAGAAAAAGATTGGATTTTGTT 118
Query 113 CACTTTATCATCTTCAATCTATCAACCCACCTGAGTTTTCTCCATTTCTCTGTTTGGTTT 172
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 119 CACTTTAACATCTTCAATCTCTAAACCCACCTGAGTTTTCTCCATTTCTCTGTTTGGTTT 178
Query 173 CTTGTCAGTTTTCTAA-AGAGCTTCCAAAT-CTGAGATCCTCTGTTTTCTCTTCTCTGTT 230
||||||||||||| || | ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 179 CTTGTCAGTTTTC-AAGAAAGCGTCCAAATCCT-AGATCCTCTGTTTTCTCTTCTCTGTT 236
Query 231 TGCTTTAATTGTCTCTGGATTCGGATCTGACCACTAAAGAGAGGTTTATCG-TTCAGACA 289
|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 TGCTTTCATTTTCTCTGGATTCGGATCTGACCACTAAAGAGAGGTTTATCGTTTCAGACA 296
Query 290 ACAAAACTCAAAGATCGAATCTTTCTTTTGTCCTTAGAGTCTGGAAAAAGCA-------- 341
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 297 ACAAAACTCAAAGATCGAATCTATCTTTTGTCCTTAGAGTCTGGAAAAAGCAGCTCTCTT 356
Query 342 --G--CT-CTCTTTAGATTCTTCAAAGCTTTAGATGCTTATCTCTCTTTCTCTCTCAGAT 396
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTGATCTCCTCTTTAGATTCTTCAAAGCTTTAGATGCTTATCTCTCTTTCTCTCTCAGAT 416
Query 397 TCCATTTCAA-AAATGCCATTTTAACAGATCAAA-ATCTCCCAC-TTT-tctctctctct 452
||||||| || |||||||||||| |||||||||| ||||||||| ||| |||||||||||
Sbjct 417 TCCATTTGAATAAATGCCATTTTGACAGATCAAATATCTCCCACTTTTCTCTCTCTCTCT 476
Query 453 ctctatct-actatctc--tTTGAGCTCCACCATTATCGAAAACTCTGtttttttctttc 509
|||| ||| || |||| ||||||||||||||||||||||||||||| | |||
Sbjct 477 CTCTCTCTCTCTCTCTCTGTTTGAGCTCCACCATTATCGAAAACTCTG------T-TTT- 528
Query 510 tttctttctttcttGATTCGATCAACAATCGTTGAAAAGATGCACAGAGGAATCGAAGTT 569
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 529 TTTCTTTCTTTCTTGATTCGATCAACAATCGTTGAAAACATGAACAGAGGAATCGAAGTT 588
Query 570 ATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACC 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACC 648
Query 630 AAATGGACAGCTGAAGAAAACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGAT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AAATGGACAGCTGAAGAAAACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGAT 708
Query 690 ACTCCTGACAGATGGTCCA-AGGTCGCTGCCATGCTTCCAGGAAAAACCA-TCGGAGATG 747
||||| ||||||||||||| || |||||||||||||||| || ||||| | |||||||||
Sbjct 709 ACTCCCGACAGATGGTCCAGAG-TCGCTGCCATGCTTCCCGGTAAAAC-AGTCGGAGATG 766
Query 748 TGATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCAGGTCTTATAC 807
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 767 TGATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCTGGTCTTATAC 826
Query 808 CAATCCCTGGCTACGCTTCCGATTCATTCACACTCGACTGGGGAGGCTACGACGGAGCCG 867
|||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||||
Sbjct 827 CAATCCCTGGTTACGCCTCTGATTCATTCACACTTGATTGGGGTGGCTACGACGGAGCAA 886
Query 868 GTGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAG 927
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GCGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAG 946
Query 928 GATCCGCCGCACGAACGGCGGAGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAG 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GATCCGCCGCACGAACGGCGGAGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAG 1006
Query 988 AACACAGACAATTTCTGATGGGTCTAAAGAAATATGGAAAAGGAGATTGGAGAAACATAG 1047
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1007 AACACAGACAATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAG 1066
Query 1048 CTCGTAACTTTGTGACAACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATT 1107
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CTCGTAACTTTGTGACCACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATT 1126
Query 1108 TCATACGTCAAGTCAACGGTGGCAAAGACAAACGCCGATCAAGTATCCACGATATCACCA 1167
||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
Sbjct 1127 TCATACGGCAAGTCAATGGTGGCAAAGACAAACGCCGTTCAAGCATCCATGATATCACAA 1186
Query 1168 CCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACTGCAAACGCAC 1227
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1187 CCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACCGCAAACGCAC 1246
Query 1228 CTTGCTCACCCCCATCAATAGGAGGAAGCCAGCGGGAAACGTCGGAATGGGAAGGTCAAA 1287
||||||| || || || ||||||||| ||||||||| || ||||| |||||||||||||
Sbjct 1247 CTTGCTCGCCACCTTCCGTAGGAGGAAACCAGCGGGAGACATCGGAGTGGGAAGGTCAAA 1306
Query 1288 CACTATACGATGAAACAACGGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTAC 1347
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CACTATACGATGAAACAGCAGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTAC 1366
Query 1348 TTGGAATGTCTTCGACGCCATACATGGCTAAACTGCAGGAGCAGAGTTTTCTGAACGCAT 1407
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1367 TTGGAATGTCTTCGACGCCCTACATGGCAAAACTTCAGGAGCAGAGTTTTCTGAACGCAT 1426
Query 1408 CACAATTCGAATCGTACAATGCGTATCTCCAAATGTAGC--ACAAGGTGAAGATCTCGGA 1465
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1427 CGCAATTCGAATCGTACAATGCGTATCTCCAAATGTAGCTCACAAGGTGAAGATCTCGGA 1486
Query 1466 GACGTTAAGAGTTATATAATCATTAATAAGTTTTACTAtttttgttttttCTTAATCGGC 1525
|| |||| ||||||||||||||||||||| |||| | ||||| | | ||||||||||
Sbjct 1487 GAAGTTACGAGTTATATAATCATTAATAA-TTTT--TGTTTTT-TCT---CTTAATCGGC 1539
Query 1526 GTGCATATACAAAAAA 1541
||||||||||||||||
Sbjct 1540 GTGCATATACAAAAAA 1555
Score = 200 bits (108), Expect = 4e-50
Identities = 130/140 (93%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 1542 TATTTGTTGTTTTGTTTACCATCTTTTTCCGTGGTTGATTCAACGAGTTTTCAACAAATT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1591 TATTTGTTGTTTTGTTTACCATCTTTTTCCGTGGTTGATTCAACGAGTTTTCAGCAAATT 1650
Query 1602 AATTAGGTTTTGTTATTTTATTTACC-GAGTGATAATTTATTTGAGTGATTTGGAACTCT 1660
|||||||||||||||||||| |||| ||||||| || |||| |||||||||||||||
Sbjct 1651 AATTAGGTTTTGTTATTTTAATTACTTGAGTGAT--TT-ATTTTTGTGATTTGGAACTCT 1707
Query 1661 TATGAGCTCAAATTGCTTAT 1680
| ||||||||||||||||||
Sbjct 1708 TTTGAGCTCAAATTGCTTAT 1727
> AT5G01200.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr5:77116-78543 FORWARD LENGTH=1053
Length=1053
Score = 206 bits (111), Expect = 8e-52
Identities = 195/235 (83%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 954 GAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTCTA 1013
|||||||||||||| ||||| ||||| || || |||||| || ||||||||||||| |
Sbjct 421 GAGAGGAAGAAAGGAGTTCCGTGGACCGAGGACGAACACCTACGATTTCTGATGGGTTTG 480
Query 1014 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCTCGTAA-CTTTGTGACAACAAGAAC 1072
||||||||||||||||||||||||||||||||||| || ||||||||| || ||||
Sbjct 481 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAA-AAGCTTTGTGACGACTCGAAC 539
Query 1073 GCCAACGCAAGTCGCAAGTCACGCTCA-AAAGTATTT-CATACGTCAAGTCAACGG-TGG 1129
||| ||||||||||| |||||||| ||| ||||| | | || ||| ||| | | |||
Sbjct 540 GCCGACGCAAGTCGCTTCACACGCTCAGAAA-TATTTTCTT-CGACAACTCA-CAGATGG 596
Query 1130 CAAAGACAAACGCCGATCAAGTATCCACGATATCACCACCGTCAACATCCCCGAC 1184
||||||||| | ||||||||||| |||||||||||||| || |||||||| |||
Sbjct 597 TAAAGACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGAC 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5