BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482816 Length=1680 Score E Sequences producing significant alignments: (Bits) Value AT2G38090.1 | Symbols: | Duplicated homeodomain-like superfami... 2172 0.0 AT5G01200.1 | Symbols: | Duplicated homeodomain-like superfami... 206 8e-52 > AT2G38090.1 | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15944711-15947085 FORWARD LENGTH=1774 Length=1774 Score = 2172 bits (1176), Expect = 0.0 Identities = 1452/1576 (92%), Gaps = 56/1576 (4%) Strand=Plus/Plus Query 1 CTGTTTCATATTCAtctctctcccatctct--ctctatctctcctctctcgc-tctc-CC 56 |||||||||||||||||||||||| ||||| |||||| ||| ||||||| | | || | Sbjct 1 CTGTTTCATATTCATCTCTCTCCCCTCTCTCCCTCTATATCT-CTCTCTCCCTTTTCGAC 59 Query 57 TTTTCGA-CTTGAG-CGTTTGGGagaaagaagaagaag-a-aaaaagGTTGGATTTTGTT 112 || || ||| | | ||||||||||||||||||||| | |||||| |||||||||||| Sbjct 60 -TTGAGAGTTTGGGTCCTTTGGGAGAAAGAAGAAGAAGAAGAAAAAGATTGGATTTTGTT 118 Query 113 CACTTTATCATCTTCAATCTATCAACCCACCTGAGTTTTCTCCATTTCTCTGTTTGGTTT 172 ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 119 CACTTTAACATCTTCAATCTCTAAACCCACCTGAGTTTTCTCCATTTCTCTGTTTGGTTT 178 Query 173 CTTGTCAGTTTTCTAA-AGAGCTTCCAAAT-CTGAGATCCTCTGTTTTCTCTTCTCTGTT 230 ||||||||||||| || | ||| ||||||| || |||||||||||||||||||||||||| Sbjct 179 CTTGTCAGTTTTC-AAGAAAGCGTCCAAATCCT-AGATCCTCTGTTTTCTCTTCTCTGTT 236 Query 231 TGCTTTAATTGTCTCTGGATTCGGATCTGACCACTAAAGAGAGGTTTATCG-TTCAGACA 289 |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 237 TGCTTTCATTTTCTCTGGATTCGGATCTGACCACTAAAGAGAGGTTTATCGTTTCAGACA 296 Query 290 ACAAAACTCAAAGATCGAATCTTTCTTTTGTCCTTAGAGTCTGGAAAAAGCA-------- 341 |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 297 ACAAAACTCAAAGATCGAATCTATCTTTTGTCCTTAGAGTCTGGAAAAAGCAGCTCTCTT 356 Query 342 --G--CT-CTCTTTAGATTCTTCAAAGCTTTAGATGCTTATCTCTCTTTCTCTCTCAGAT 396 | || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TTGATCTCCTCTTTAGATTCTTCAAAGCTTTAGATGCTTATCTCTCTTTCTCTCTCAGAT 416 Query 397 TCCATTTCAA-AAATGCCATTTTAACAGATCAAA-ATCTCCCAC-TTT-tctctctctct 452 ||||||| || |||||||||||| |||||||||| ||||||||| ||| ||||||||||| Sbjct 417 TCCATTTGAATAAATGCCATTTTGACAGATCAAATATCTCCCACTTTTCTCTCTCTCTCT 476 Query 453 ctctatct-actatctc--tTTGAGCTCCACCATTATCGAAAACTCTGtttttttctttc 509 |||| ||| || |||| ||||||||||||||||||||||||||||| | ||| Sbjct 477 CTCTCTCTCTCTCTCTCTGTTTGAGCTCCACCATTATCGAAAACTCTG------T-TTT- 528 Query 510 tttctttctttcttGATTCGATCAACAATCGTTGAAAAGATGCACAGAGGAATCGAAGTT 569 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 529 TTTCTTTCTTTCTTGATTCGATCAACAATCGTTGAAAACATGAACAGAGGAATCGAAGTT 588 Query 570 ATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACC 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 ATGTCACCAGCAACATATCTAGAGACATCAAACTGGTTGTTTCAAGAAAACAGAGGAACC 648 Query 630 AAATGGACAGCTGAAGAAAACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGAT 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 AAATGGACAGCTGAAGAAAACAAGAAATTCGAAAACGCTTTAGCCTTTTACGACAAAGAT 708 Query 690 ACTCCTGACAGATGGTCCA-AGGTCGCTGCCATGCTTCCAGGAAAAACCA-TCGGAGATG 747 ||||| ||||||||||||| || |||||||||||||||| || ||||| | ||||||||| Sbjct 709 ACTCCCGACAGATGGTCCAGAG-TCGCTGCCATGCTTCCCGGTAAAAC-AGTCGGAGATG 766 Query 748 TGATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCAGGTCTTATAC 807 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 767 TGATCAAACAATACAGAGAGCTTGAGGAAGACGTTAGCGACATCGAAGCTGGTCTTATAC 826 Query 808 CAATCCCTGGCTACGCTTCCGATTCATTCACACTCGACTGGGGAGGCTACGACGGAGCCG 867 |||||||||| ||||| || |||||||||||||| || ||||| |||||||||||||| Sbjct 827 CAATCCCTGGTTACGCCTCTGATTCATTCACACTTGATTGGGGTGGCTACGACGGAGCAA 886 Query 868 GTGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAG 927 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 GCGGTAACAATGGGTTTAACATGAACGGTTACTACTTTTCCGCCGCCGGAGGAAAGAGAG 946 Query 928 GATCCGCCGCACGAACGGCGGAGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAG 987 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 947 GATCCGCCGCACGAACGGCGGAGCATGAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAG 1006 Query 988 AACACAGACAATTTCTGATGGGTCTAAAGAAATATGGAAAAGGAGATTGGAGAAACATAG 1047 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1007 AACACAGACAATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGATTGGAGAAACATAG 1066 Query 1048 CTCGTAACTTTGTGACAACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATT 1107 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1067 CTCGTAACTTTGTGACCACAAGAACGCCAACGCAAGTCGCAAGTCACGCTCAAAAGTATT 1126 Query 1108 TCATACGTCAAGTCAACGGTGGCAAAGACAAACGCCGATCAAGTATCCACGATATCACCA 1167 ||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||| | Sbjct 1127 TCATACGGCAAGTCAATGGTGGCAAAGACAAACGCCGTTCAAGCATCCATGATATCACAA 1186 Query 1168 CCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACTGCAAACGCAC 1227 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1187 CCGTCAACATCCCCGACTCTCCTGACGCTGCAGCCGCGGATAACGCAACCGCAAACGCAC 1246 Query 1228 CTTGCTCACCCCCATCAATAGGAGGAAGCCAGCGGGAAACGTCGGAATGGGAAGGTCAAA 1287 ||||||| || || || ||||||||| ||||||||| || ||||| ||||||||||||| Sbjct 1247 CTTGCTCGCCACCTTCCGTAGGAGGAAACCAGCGGGAGACATCGGAGTGGGAAGGTCAAA 1306 Query 1288 CACTATACGATGAAACAACGGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTAC 1347 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 1307 CACTATACGATGAAACAGCAGCTGCGTTTTATAATCAAAACGCGTTTTCAGAAACGCTAC 1366 Query 1348 TTGGAATGTCTTCGACGCCATACATGGCTAAACTGCAGGAGCAGAGTTTTCTGAACGCAT 1407 ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 1367 TTGGAATGTCTTCGACGCCCTACATGGCAAAACTTCAGGAGCAGAGTTTTCTGAACGCAT 1426 Query 1408 CACAATTCGAATCGTACAATGCGTATCTCCAAATGTAGC--ACAAGGTGAAGATCTCGGA 1465 | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1427 CGCAATTCGAATCGTACAATGCGTATCTCCAAATGTAGCTCACAAGGTGAAGATCTCGGA 1486 Query 1466 GACGTTAAGAGTTATATAATCATTAATAAGTTTTACTAtttttgttttttCTTAATCGGC 1525 || |||| ||||||||||||||||||||| |||| | ||||| | | |||||||||| Sbjct 1487 GAAGTTACGAGTTATATAATCATTAATAA-TTTT--TGTTTTT-TCT---CTTAATCGGC 1539 Query 1526 GTGCATATACAAAAAA 1541 |||||||||||||||| Sbjct 1540 GTGCATATACAAAAAA 1555 Score = 200 bits (108), Expect = 4e-50 Identities = 130/140 (93%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 1542 TATTTGTTGTTTTGTTTACCATCTTTTTCCGTGGTTGATTCAACGAGTTTTCAACAAATT 1601 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1591 TATTTGTTGTTTTGTTTACCATCTTTTTCCGTGGTTGATTCAACGAGTTTTCAGCAAATT 1650 Query 1602 AATTAGGTTTTGTTATTTTATTTACC-GAGTGATAATTTATTTGAGTGATTTGGAACTCT 1660 |||||||||||||||||||| |||| ||||||| || |||| ||||||||||||||| Sbjct 1651 AATTAGGTTTTGTTATTTTAATTACTTGAGTGAT--TT-ATTTTTGTGATTTGGAACTCT 1707 Query 1661 TATGAGCTCAAATTGCTTAT 1680 | |||||||||||||||||| Sbjct 1708 TTTGAGCTCAAATTGCTTAT 1727 > AT5G01200.1 | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:77116-78543 FORWARD LENGTH=1053 Length=1053 Score = 206 bits (111), Expect = 8e-52 Identities = 195/235 (83%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 954 GAGAGGAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAGACAATTTCTGATGGGTCTA 1013 |||||||||||||| ||||| ||||| || || |||||| || ||||||||||||| | Sbjct 421 GAGAGGAAGAAAGGAGTTCCGTGGACCGAGGACGAACACCTACGATTTCTGATGGGTTTG 480 Query 1014 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCTCGTAA-CTTTGTGACAACAAGAAC 1072 ||||||||||||||||||||||||||||||||||| || ||||||||| || |||| Sbjct 481 AAGAAATATGGAAAAGGAGATTGGAGAAACATAGCAAA-AAGCTTTGTGACGACTCGAAC 539 Query 1073 GCCAACGCAAGTCGCAAGTCACGCTCA-AAAGTATTT-CATACGTCAAGTCAACGG-TGG 1129 ||| ||||||||||| |||||||| ||| ||||| | | || ||| ||| | | ||| Sbjct 540 GCCGACGCAAGTCGCTTCACACGCTCAGAAA-TATTTTCTT-CGACAACTCA-CAGATGG 596 Query 1130 CAAAGACAAACGCCGATCAAGTATCCACGATATCACCACCGTCAACATCCCCGAC 1184 ||||||||| | ||||||||||| |||||||||||||| || |||||||| ||| Sbjct 597 TAAAGACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGAC 651 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83031701430 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5