BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482818
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38110.1 | Symbols: ATGPAT6, GPAT6 | glycerol-3-phosphate ac... 2647 0.0
> AT2G38110.1 | Symbols: ATGPAT6, GPAT6 | glycerol-3-phosphate
acyltransferase 6 | chr2:15952607-15955494 REVERSE LENGTH=1845
Length=1845
Score = 2647 bits (1433), Expect = 0.0
Identities = 1631/1728 (94%), Gaps = 7/1728 (0%)
Strand=Plus/Plus
Query 22 AtctctctcttctcttctctctcCGGCTTCTTCACTAATGGGAGCTCAGGAGAAACGACG 81
|||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 95 ATCT-TCTCTTTTCTCCTCTCTCCAACTTCTTCACTAATGGGAGCTCAGGAGAAACGGCG 153
Query 82 TCGTTTCGAGCCGATATCAAAGTGCGACGTTAAGGACCGGTACAACCAAACCGTGGCCGC 141
|||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||
Sbjct 154 CCGTTTCGAGCAGATATCAAAGTGCGATGTTAAGGACCGGTCCAACCATACCGTGGCCGC 213
Query 142 TGATCTAGACGGGACACTACTGATCTCACGTAGCGCCTTCCCTTACTATTTCCTCGTAGC 201
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 214 TGATCTAGACGGAACACTACTAATCTCTCGTAGCGCCTTCCCTTACTATTTCCTCGTAGC 273
Query 202 CCTCGAGGCAGGGGGCTTGCTCCGAGCATTGATCCTACTCGTGTCCGTACCGTTCGTTTA 261
||||||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 274 CCTCGAGGCAGGGAGCTTGCTCCGAGCGTTGATCCTACTTGTGTCCGTACCATTCGTTTA 333
Query 262 TCTTACGTACTTGACCGTCTCGGAGACTTTGGCCATCAACGTTTTTGTCTTCATCACGTT 321
|||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 334 TCTTACGTACTTGACCATCTCCGAGACTTTAGCCATCAACGTATTTGTCTTCATCACGTT 393
Query 322 TGCGGGTCTCAGGATCCGAGACGTTGAGCTAGTGGTCCGTTCCGTCCTCCCGAGGTTCTA 381
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CGCGGGTCTCAAGATCCGAGACGTTGAGCTAGTGGTCCGTTCCGTCCTCCCGAGGTTCTA 453
Query 382 CGCGGAGGACGTGAGGCCCGATACTTGGCGTATCTTTAACACGTTTGGGAAACGGTACAT 441
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 454 TGCGGAGGACGTGAGGCCCGATACCTGGCGTATCTTCAACACGTTCGGGAAACGGTACAT 513
Query 442 AGTAACGGCGAGTCCTCGAATCATGGTCGAGCCGTTCGTGAAGACATACCTAGGAGTTGA 501
| |||| ||||| |||||||| ||||||||||| |||||||| |||| ||||||||||||
Sbjct 514 AATAACTGCGAGCCCTCGAATTATGGTCGAGCCATTCGTGAAAACATTCCTAGGAGTTGA 573
Query 502 TAAAGTTCTCGGAACAGAACTAGAGGTCTCCAAATCGGGTCGGGCAACCGGGTTCACCAG 561
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TAAAGTTCTTGGAACAGAGCTAGAGGTCTCCAAATCGGGTCGGGCAACCGGGTTCACCAG 633
Query 562 AAAACCCGGTATTCTCGTGGGTCAGCACAAACGTGACGTCGTTTTGAGAGAGTTTGGTAG 621
|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 634 AAAACCAGGTATTCTCGTCGGTCAGTACAAACGTGACGTCGTTTTGAGAGAGTTTGGTGG 693
Query 622 CCTTGCGTCTGATTTACCTGATTTGGGGCTCGGCGATAGCAAGACGGACCACGACTTCAT 681
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CCTAGCGTCTGATTTACCTGATTTGGGGCTCGGCGATAGCAAGACGGACCACGACTTCAT 753
Query 682 GTCCATCTGCAAGGAAGGTTACATGGTGCCACGTACGAAATGCGAACCCTTACCAAGAAA 741
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 754 GTCCATCTGCAAGGAAGGTTACATGGTGCCACGTACGAAATGCGAACCATTACCAAGAAA 813
Query 742 CAAACTCTTAAGCCCCATAATATTCCACGAGGGCAGATTAGTCCAACGCCCAACGCCGTT 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CAAACTCTTAAGCCCCATAATATTCCACGAGGGCAGATTAGTCCAACGCCCAACGCCGTT 873
Query 802 AGTTGCTCTGTTAACTCTCCTTTGGCTTCCCGTCGGTTTCCTCCTCTCTCTTATCCGCGT 861
|||||||||||||||| |||| |||||||||||||||||| |||||||| | ||||||||
Sbjct 874 AGTTGCTCTGTTAACTTTCCTCTGGCTTCCCGTCGGTTTCGTCCTCTCTATCATCCGCGT 933
Query 862 CTACACGAATATTCCGTTACCCGAACGTATCGCCCGTTACAACTACAAGCTCACTGGCAT 921
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 934 CTACACGAATATTCCGTTACCGGAACGTATCGCCCGTTACAACTACAAGCTTACTGGCAT 993
Query 922 CAAGCTAATCGTCAACGGTCACCCTCCTCCGCCGCCAAAACCTGGCCAACCAGGCCATCT 981
||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 994 CAAGCTAGTCGTCAACGGCCACCCTCCTCCGCCGCCAAAACCTGGCCAGCCAGGCCATCT 1053
Query 982 CTTGGTTTGTAACCACCGCACCGTCCTTGACCCGGTGGTGACAGCCGTCGCGCTCGGCAG 1041
||||| || |||||||||||||| || || || ||||| ||||| ||||| |||||| |
Sbjct 1054 TTTGGTCTGCAACCACCGCACCGTTCTCGATCCTGTGGTCACAGCTGTCGCACTCGGCCG 1113
Query 1042 GAAAATCAGCTGCGTCACTTATAGCATCAGCAAGTTCTCTGAGCTAATCTCACCAATCAA 1101
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GAAAATCAGCTGCGTCACTTACAGCATCAGCAAGTTCTCTGAGCTAATCTCACCAATCAA 1173
Query 1102 AGCCGTTGCGTTGACTCGTCAACGTGAGAAAGACGCAGCGAACATCAAGCGTCTTTTGGA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AGCCGTTGCGTTGACTCGTCAACGTGAGAAAGACGCAGCGAACATCAAGCGTCTTTTGGA 1233
Query 1162 AGAAGGCGATCTTGTGATCTGTCCCGAGGGAACCACGTGCCGCGAGCCTTTCCTTCTCCG 1221
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1234 GGAAGGCGATCTCGTGATATGTCCCGAGGGAACCACGTGCCGTGAGCCTTTCCTTCTCCG 1293
Query 1222 GTTTAGTGCCCTCTTCGCTGAGCTCACGGACCGGATCGTTCCCGTGGCGATCAACACGAA 1281
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1294 GTTTAGTGCTCTTTTCGCTGAGCTCACGGACCGGATCGTTCCCGTGGCGATCAACACAAA 1353
Query 1282 GCAGAGCATGTTCAATGGTACTACCACACGTGGCTACAAGCTTCTTGATCCTTACTTCGC 1341
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1354 GCAGAGCATGTTCAATGGTACCACCACACGTGGATACAAGCTTCTTGATCCTTACTTTGC 1413
Query 1342 GTTCATGAACCCGAGGCCGACGTACGAGATCACGTTCCTCAAACAGATTCCCGCTGAGCT 1401
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1414 GTTCATGAACCCGAGGCCGACGTATGAGATCACGTTCCTCAAACAGATTCCAGCTGAGCT 1473
Query 1402 GACGTGTAAAGGAGGCAAATCGCCGATAGAGGTGGCGAATTACATCCAAAGGGTTTTGGG 1461
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 1474 GACGTGTAAAGGAGGCAAATCTCCGATAGAGGTTGCGAATTACATACAGAGGGTTTTGGG 1533
Query 1462 AGGAACCTTAGGTTTTGAGTGCACCAATTTCACAAGAAAGGATAAGTACGCAATGCTTGC 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 AGGAACCTTAGGTTTTGAGTGCACCAATTTCACAAGAAAGGATAAGTACGCAATGCTTGC 1593
Query 1522 TGGTACCGACGGTAGGGTTCCGGTGAAGAAGGAGAAGACGTGATTATTGATCGGAGAATG 1581
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1594 TGGTACTGACGGTAGGGTTCCGGTGAAGAAGGAGAAGACGTGATTATTGATCGGAGGATG 1653
Query 1582 GAGAAAACGAAGAAATAATACAAAGATTGGAATCTTTTTTCATTTGGATGGTTAATTATC 1641
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1654 GAGAAAACAAAGAAATAATACAAAGATTGGAATCTTTTT-CATTTGGATGGTTAATTATC 1712
Query 1642 AATATTTAAGGGGCAAAGAATTGATAAGTTTAtttttttGTTGTTTTCTTTATCTTCTCT 1701
|||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 1713 AATACTTAAGGGGCAAAGAATTGATAAGTTTGTTTTT--GTTGTTACCTTTATCTTCTCT 1770
Query 1702 GCTTCGATGAATGTTTC---AAGATTTACTTTTAGTACAATAACGGTT 1746
|||||| |||||||||| ||| ||||| ||||||||||||||||||
Sbjct 1771 GCTTCGGTGAATGTTTCTTCAAGTTTTACATTTAGTACAATAACGGTT 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5