BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482819
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38120.1 | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane a... 3029 0.0
> AT2G38120.1 | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane
amino acid transporter family protein | chr2:15972993-15977180
FORWARD LENGTH=2135
Length=2135
Score = 3029 bits (1640), Expect = 0.0
Identities = 1854/1954 (95%), Gaps = 28/1954 (1%)
Strand=Plus/Plus
Query 1 GAAGCATCTTGTAGTATTTTTAGCTTCATTCCTTCTCTTGCTCAGATCAAAG-------- 52
|||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1 GAAGCATCTTATAGTATTTTTAGCTTCATTCCTTCTTTTGCTCTGATCAAAGTCTTCTCC 60
Query 53 -t--c-t-tctctctctttcctcctctgcacatttctggg---ttctcttcttatgctct 104
| | | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TTCCCTTCTCTCTCTCTTTCCTCCTCTGCACATTTCTGGGTTCTTCTCTTCTTATGCTCT 120
Query 105 gtttctttAAAGACACAGAAGAAAGAGAGTACAGAGTTGTGATTTTCTTAAAC-AAAGTG 163
|||||||| |||||||||||| || | |||||||||||| ||||||||||||| ||||||
Sbjct 121 GTTTCTTTTAAGACACAGAAG-AA-ACAGTACAGAGTTGAGATTTTCTTAAACAAAAGTG 178
Query 164 AAAA-AGAAGAAACAAGTGACAGCTCAAACGGACAAAAACTAGTCTTGGGTCTTTCTTGT 222
|||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 179 AAAAGAGAAGAAACAAGTGACAGCTCAAACGGACAAAAACCACTCTTGGGTCTTTCTTGC 238
Query 223 TTCTGATTCTTTCTCTTCTCTAAAAGAAGAAAACATCTAGAAGCTAGAAAAATGTCGGAA 282
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 239 TTCTGATTCTTTCTCTTCTCTAATAGAAGAAAACATCTAGAAGCTAAAAAAATGTCGGAA 298
Query 283 GGAGTAGAAGCGATAGTAGCAAATGACAACGGAACAGATCAGATGAACGGAAACCGTACC 342
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 299 GGAGTAGAAGCGATAGTAGCAAATGACAACGGAACAGATCAGGTAAACGGAAACCGTACC 358
Query 343 GGAAAAGACAACGAAGAACACGACGGCTCCACCGGTTCTAACCTAAGCAATTTCCTCTGG 402
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 GGGAAAGATAACGAAGAACACGACGGCTCCACCGGTTCTAACCTAAGCAATTTCCTATGG 418
Query 403 CATGGTGGCTCTGTCTGGGACGCTTGGTTCAGCTGCGCATCTAACCAAGTGGCTCAAGTG 462
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CACGGTGGCTCTGTCTGGGACGCTTGGTTCAGCTGCGCATCTAACCAAGTGGCTCAAGTG 478
Query 463 CTATTGACATTACCGTACTCGTTTAGTCAATTAGGGATGTTATCAGGAATAGTACTTCAG 522
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 479 TTATTGACATTACCGTACTCGTTTAGTCAACTAGGAATGTTATCAGGAATAGTACTTCAG 538
Query 523 ATCTTCTATGGTTTACTCGGAAGCTGGACTGCTTATCTCATCTCTGTTCTCTACGTCGAG 582
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCTTCTATGGTTTACTAGGAAGCTGGACTGCTTATCTCATCTCTGTTCTCTACGTCGAA 598
Query 583 TACAGAGCTCGTAAAGAAAAAGAAGGCAAAAGCTTCAAAAACCACGTCATTCAGTGGTTT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TACAGAGCTCGTAAAGAAAAAGAAGGCAAAAGCTTCAAAAACCACGTCATTCAGTGGTTT 658
Query 643 GAAGTACTCGATGGATTACTTGGTTCATATTGGAAAGCAGTAGGACTCGCATTTAATTGC 702
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 659 GAAGTACTTGATGGATTACTTGGTTCATACTGGAAAGCACTAGGACTCGCATTTAATTGC 718
Query 703 ACTTTTCTCTTGTTTGGATCTGTTATCCAACTCATTGCTTGTGCCAGTAACATTTATTAC 762
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACTTTCCTCTTGTTTGGATCTGTTATCCAACTCATTGCTTGTGCCAGTAACATTTATTAC 778
Query 763 ATAAACGATCATTTGGACAAGAGAACATGGACTTACATATTTGGCGCGTGTTGTGCAACC 822
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATAAACGATCATCTGGACAAGAGAACATGGACTTACATATTTGGCGCGTGTTGTGCAACC 838
Query 823 ACTGTCTTTATACCGTCGTTTCATAATTACCGAATTTGGTCGTTCCTTGGCCTTGGTATG 882
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 839 ACTGTCTTTATACCGTCGTTTCACAATTACCGAATTTGGTCATTCCTTGGCCTTGGAATG 898
Query 883 ACCACTTACACCGCTTGGTACTTAGCCATTGCCTCCATCATCCACGGCCAGACGGAGGGT 942
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 899 ACCACTTACACCGCTTGGTACTTAGCCATTGCCTCCATCATCCACGGCCAGGCGGAAGGT 958
Query 943 GTGAAACACTCAGGTCCAACAAAGCTAGTGCTTTATTTTACCGGAGCCACAAATATTTTG 1002
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 GTGAAACATTCAGGTCCAACAAAGCTAGTGCTTTATTTTACGGGAGCCACAAATATTTTG 1018
Query 1003 TACACCTTTGGAGGTCACGCGGTTACTGTTGAGATTATGCATGCTATGTGGAAACCACAG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TACACCTTTGGAGGTCACGCGGTTACTGTTGAGATTATGCATGCTATGTGGAAACCACAG 1078
Query 1063 AAGTTTAAGTACATTTACTTGATGGCGACGTTATACGTTTTCACACTAACTATTCCGTCG 1122
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1079 AAGTTTAAGTACATTTACTTGATGGCGACGTTATACGTGTTCACGCTAACGATTCCGTCA 1138
Query 1123 GCTGCCGCCGTTTACTGGGCCTTCGGAGACGCACTTCTCGACCACTCCAACGCCTTCTCT 1182
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1139 GCTGCCGCCGTTTACTGGGCTTTCGGAGACGCACTTCTCGACCACTCCAACGCTTTCTCT 1198
Query 1183 CTCATGCCCAAGAACGCGTGGCGTGACGCCGCTGTTATCCTCATGCTCATTCATCAGTTT 1242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTTATGCCCAAGAACGCGTGGCGTGACGCCGCTGTTATCCTCATGCTCATTCATCAGTTT 1258
Query 1243 ATAACGTTCGGGTTCGCATGTACACCATTGTACTTTGTGTGGGAGAAAGTGATAGGGATG 1302
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1259 ATAACGTTCGGGTTCGCTTGTACACCTTTGTACTTTGTGTGGGAGAAAGTGATTGGGATG 1318
Query 1303 CATGACACAAAGAGCATTTGCTTAAGGGCTTTGGCTAGATTGCCTGTTGTTATACCGATT 1362
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 1319 CATGACACAAAGAGCATTTGCTTAAGGGCTTTGGCTAGATTGCCTGTGGTCATACCTATT 1378
Query 1363 TGGTTCTTAGCTATTATCTTCCCCTTTTTCGGTCCCATCAATTCCGCCGTCGGTGCTCTT 1422
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1379 TGGTTCTTAGCTATTATCTTCCCCTTTTTCGGTCCAATCAATTCCGCTGTCGGTGCTCTT 1438
Query 1423 CTCGTTAGCTTCACCGTCTATATCATCCCTTCCCTCGCTCACATGCTCACTTACCGATCT 1482
|| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1439 CTTGTTAGCTTCACCGTCTATATCATCCCATCTCTCGCTCACATGCTCACTTACCGATCT 1498
Query 1483 GCCTCCGCTCGTCAGAATGCGGCGGAGAAGCCACCGTTCTTTATGCCAAGCTGGACGGCG 1542
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1499 GCCTCCGCTCGTCAGAATGCGGCGGAGAAGCCACCGTTCTTTATGCCGAGCTGGACGGCG 1558
Query 1543 ATGTATGTGTTGAATGCCTTCGTGGTGGTTTGGGTTCTTATAGTCGGATTCGGGTTCGGT 1602
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1559 ATGTACGTGTTGAATGCTTTCGTGGTGGTTTGGGTTCTTATAGTCGGATTTGGGTTCGGT 1618
Query 1603 GGATGGGCTAGTGTAACCAACTTTGTTCGTCAAGTCGATACTTTTGGTCTCTTTGCTAAG 1662
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1619 GGATGGGCTAGTGTAACCAACTTTGTTCGTCAAGTCGACACTTTTGGTCTCTTTGCCAAG 1678
Query 1663 TGTTACCAATGTAAACCAGCTGCAGCCGCCGCTCATGCTCCGGTCTCTGCTTTACACCAC 1722
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1679 TGTTACCAATGTAAACCAGCTGCAGCCGCCGCACATGCCCCGGTCTCCGCTTTACACCAC 1738
Query 1723 CGTCCTTGAGAGATCGAGCCAGGGGTGGTCTAATGCTTTTGTGGAGGGTTCTTAAGATTA 1782
|||| ||||||||||||| ||||| | |||||||| |||||||||||||||||| ||||
Sbjct 1739 CGTCTTTGAGAGATCGAGTCAGGGTTCTTCTAATGCGTTTGTGGAGGGTTCTTAAAATTA 1798
Query 1783 TTTGTTCTTCTTTTGTGTTTTGTGGTCGTATACGTGA-GGGAGTAAAAGTCACGAAAATA 1841
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1799 TTTGTTCTTCTTTTGTGTTTTGTGTTCGTATACGTGAAGGGAGTAAAAGTCACGAAAATA 1858
Query 1842 GTGCT-CTTTT-ACAC-CTC-TTTAAATGCGTGCTAAGCTCTTAAttttttttttttctc 1897
||| | ||||| |||| | | |||||||||||||||||||||||||| ||||||| |||
Sbjct 1859 GTG-TACTTTTTACACACCCCTTTAAATGCGTGCTAAGCTCTTAATTATTTTTTTCTCT- 1916
Query 1898 ttctggggttttgtatttttgttttCACTCCTTA 1931
|| |||||||||||||||||||||||||||||||
Sbjct 1917 TT-TGGGGTTTTGTATTTTTGTTTTCACTCCTTA 1949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95632038225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5