BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482821
Length=559
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38140.1 | Symbols: PSRP4 | plastid-specific ribosomal prote... 771 0.0
> AT2G38140.1 | Symbols: PSRP4 | plastid-specific ribosomal protein
4 | chr2:15980883-15981612 FORWARD LENGTH=575
Length=575
Score = 771 bits (417), Expect = 0.0
Identities = 528/578 (91%), Gaps = 22/578 (4%)
Strand=Plus/Plus
Query 1 ACTCTCACTACCTTATCTTCTTCT---TCTTCCTC-TCCAACAAATTCGAAAACAGCACA 56
||||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct 1 ACTCTCACTGCCTTATCTTCTTCTGGATCTTCTTCTTCGAACAAATTCGAAAACAGCACA 60
Query 57 CGGCGATGGCGTCGCTTATACTCGGAGCTCCTCCGCGAGTCACCGTCGTATTATTTTCTT 116
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 61 CGGCGATGGCGTCGCTTATACTCGGAGCTCCTCCGCGAGTCACCGTCGCATTACCTTCCT 120
Query 117 CACGGTTATCATCATCTCACTCAGAAACCGCCGGTGtctctctctcttgctccactcagc 176
||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||| |
Sbjct 121 CACGGTTATCATCTTCTCACTCTGAAACTGCCGGTGTCTCTCTCTCTTGCTTCACTCATC 180
Query 177 aattctctctctcCACTTCATCTTCCAGCTCAATTCCACTAGTGTACTGTGGTAGAGGTG 236
||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct 181 AATTCTCTCTCTCCACTTCCTCATCCAGCTCAATTCCACTCGTGTACTGTGGCAGAGGTG 240
Query 237 ACCGTAAAACAGCTAAAGGAAAGCGTTTCAATCACTCTTTTGGGAATGCGAGGCCGAGAA 296
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 ACCGGAAAACAGCTAAAGGAAAGCGTTTCAATCACTCTTTTGGGAATGCGAGGCCAAGAA 300
Query 297 ACAAGAACAAAGGAAGAGGACCAGAGAGAGTACCGGTTCCTCCAGCACCACCGAGGAAAG 356
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAAGAGCAAAGGAAGAGGACCGGAGAGAGTACCGGTTCCTCCAGCACCACCGAGGAAAG 360
Query 357 ATAAGTATGAGAACGATGAGAAGATCAAAATCGACATCGACGAGTCTCTCTTCTCTAATT 416
|||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 ATAAGTTTGAGAACGACGAGAAGATCAAAATCGATATCGACGAGTCTCTCTTCTCTAATT 420
Query 417 AGAAA-ATGAGATTCTTCA-TT-----C----ACTGTAATTTTAATTTGTTTTTAGAAAC 465
||||| ||||||||||||| || | |||||||||||||||||||||| ||||
Sbjct 421 AGAAATATGAGATTCTTCACTTGTTGTCTCTCACTGTAATTTTAATTTGTTTTTTGAAAA 480
Query 466 -CTTTGTTGATGCTGCGACTCTTTTGTTGTTAAAA-CATCTCCAA-GTTCTCATCTTTCT 522
||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||| |
Sbjct 481 GCTTTG---ATGCTACGACTCTTTTGTTGTTAAAAACATCTCCAAAGTTCTCATCTTTTT 537
Query 523 ATGAAA-GTTTGCTTCTTTATGAGTCATTGAGTCTTTT 559
|||||| |||||||||||||||| ||||||||||||||
Sbjct 538 ATGAAAAGTTTGCTTCTTTATGAATCATTGAGTCTTTT 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26825034498
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5