BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482825
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38170.3 | Symbols: CAX1, ATCAX1, RCI4 | cation exchanger 1 ... 2237 0.0
AT3G51860.1 | Symbols: CAX3, ATHCX1, CAX1-LIKE, ATCAX3 | cation... 863 0.0
> AT2G38170.3 | Symbols: CAX1, ATCAX1, RCI4 | cation exchanger
1 | chr2:15990045-15993278 REVERSE LENGTH=1596
Length=1596
Score = 2237 bits (1211), Expect = 0.0
Identities = 1353/1421 (95%), Gaps = 11/1421 (1%)
Strand=Plus/Plus
Query 1 acaaaacaaacataaagaatcagcaaaacaaaattcgaagagacacccaaaacaaaaaaa 60
||||||||||||||||||||||||||| |||||||||||||| | | |||||||||
Sbjct 1 ACAAAACAAACATAAAGAATCAGCAAAGCAAAATTCGAAGAG--A--C---ACAAAAAAA 53
Query 61 aCTTCATTTGTGTCTCAGAATTTACAAAGTCTTGAATCAGTAGAGAAATGGCGGGAATCG 120
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 54 CCTTCGTTTGTGTCTCAGAATTTACAAAGTTTTGAGTCAGTAGAGAAATGGCGGGAATCG 113
Query 121 TGACAGAGCCGTGGTCAGTGGCGGAGAACGGGAACGCAAGCATGACGGCCAAAGGATCGA 180
||||||||||||||||||| || |||||||| ||| ||||||| ||||| ||||||||||
Sbjct 114 TGACAGAGCCGTGGTCAGTAGCTGAGAACGGAAACCCAAGCATAACGGCGAAAGGATCGA 173
Query 181 GTAGAGAACTGAGACTTGGAAGAACAGCGCATAGCATGTCTTCTTCTTCTCTGAGGAAGA 240
| |||||||| |||||||||||||| || || | |||||||||||||||| ||||||| |
Sbjct 174 GCAGAGAACTAAGACTTGGAAGAACCGCTCACAACATGTCTTCTTCTTCTTTGAGGAAAA 233
Query 241 AATCAGACCTCCGAGTGATTCAAAAGGTTCCATACAAAGGACTTAAAGATTTTCTCTCTA 300
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 234 AATCAGACCTCCGAGTGATTCAGAAGGTTCCATACAAAGGTCTTAAAGATTTTCTCTCTA 293
Query 301 ATCTTCAAGAAGTCATTCTCGGAACAAAGCTTGCCATTCTTTTTCCGGCCATACCCGCCG 360
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 294 ATCTCCAAGAAGTCATTCTCGGAACAAAGCTTGCCATTCTTTTTCCGGCCATTCCTGCCG 353
Query 361 CCATTATTTGCACTTATTGTGGCGTCAGTCAGCCTTGGATATTTGGACTTAGCTTGCTAG 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CCATTATTTGCACCTATTGTGGCGTCAGTCAGCCTTGGATATTTGGACTTAGCTTGCTAG 413
Query 421 GACTGACTCCTTTGGCTGAGCGAGTCAGCTTTTTGACAGAGCAACTAGCTTTCTACACCG 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GACTGACACCTTTGGCTGAGCGAGTCAGCTTTTTGACAGAGCAACTAGCTTTCTACACCG 473
Query 481 GTCCTACATTGGGTGGTTTATTGAACGCAACTTGTGGAAACGCGACTGAATTGATAATCG 540
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 474 GTCCTACATTGGGTGGTCTATTGAACGCAACGTGTGGAAACGCGACTGAATTGATAATCG 533
Query 541 CAATTCTTGCTTTGACCAATAACAAGGTCGCAGTGGTGAAATATTCGCTGCTAGGTTCGA 600
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 534 CGATTCTTGCTTTGACCAATAACAAAGTCGCAGTGGTGAAATATTCGCTGCTAGGTTCGA 593
Query 601 TTTTGTCGAACCTTTTATTGGTTCTAGGGACTTCACTCTTCTGTGGAGGAATCGCTAATA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TTTTGTCGAACCTTTTATTGGTTCTAGGGACTTCACTCTTCTGTGGAGGAATCGCTAATA 653
Query 661 TCCGAAGGGAGCAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTACTTCTAA 720
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TCCGAAGGGAACAGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTACTTCTAC 713
Query 721 TGGGTTTCTTGTGTCACTTGCTGCCATTGTTGGTGGAATACTTGGCAAACGGAAAGACTT 780
|||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||
Sbjct 714 TGGGTTTCTTGTGTCACTTGCTGCCATTGTTGGTGGGATACTTGAAAAACGGAGAGGCTT 773
Query 781 CGGCTGCTGTTTTGTCCGACATGCAACTGAGTATATCGCGAGGCTTCAGTATTGTTATGT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CGGCTGCTGTTTTGTCCGACATGCAACTGAGTATATCGCGAGGCTTCAGTATTGTTATGT 833
Query 841 TGATCAGTTACATCGCATATCTTGTTTTCCAACTTTGGACTCACCGCCAATTGTTCGATG 900
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 834 TGATCAGCTACATTGCATATCTTGTTTTCCAACTGTGGACTCACCGCCAATTGTTCGATG 893
Query 901 CACAAGATCAGGAGGATGAGTATGATGACGATGTGGAGGAAGAAACCGCGGTTATTAGTT 960
||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 894 CACAAGAACAGGAAGATGAGTATGATGACGATGTGGAGCAAGAAACCGCGGTGATTAGTT 953
Query 961 TTTGGAGCGGTTTTGTC-TGGTTGGTTGGGATGACACTC-TTCATCGCATTGCTATCGGA 1018
||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||
Sbjct 954 TTTGGAGCGGTTTTG-CATGGTTGGTTGGGATGACACTCGTT-ATCGCATTGCTATCGGA 1011
Query 1019 GTATGTTGTAGCCACGATTGAGGAAGCATCAGATAAATGGAACTTATCAGTGAGTTTCAT 1078
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1012 GTATGTTGTAGCCACGATTGAGGAAGCATCGGATAAATGGAACTTATCAGTGAGTTTCAT 1071
Query 1079 AAGCATCATATTGCTTCCTATTGTTGGAAACGCAGCTGAACATGCTGGAGCCGTTATTTT 1138
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1072 AAGCATCATATTGCTTCCTATTGTTGGAAATGCAGCTGAACATGCTGGAGCCGTTATTTT 1131
Query 1139 TGCCTTTAAGAACAAGCTCGACATATCTTTGGGAGTTGCATTAGGCTCTGCGACTCAGAT 1198
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1132 TGCCTTTAAGAACAAGCTTGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGAT 1191
Query 1199 TGGCTTATTCGTCGTCCCCTTGACCATCGTCGTGGCATGGATTTTGGGAATTAACATGGA 1258
|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 1192 TGGCTTATTCGTTGTCCCCTTGACCATCATCGTGGCGTGGATTTTGGGAATTAATATGGA 1251
Query 1259 TCTCAATTTCGGTCTCCTCGAAACTGGCTGTCTTGCTGTTTCCATTATCATCACAGCCTT 1318
||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1252 TCTCAATTTTGGTCCCCTCGAAACTGGCTGTCTTGCTGTTTCCATAATCATCACAGCGTT 1311
Query 1319 CACATTACAGGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCTTTGCTATTT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CACATTACAGGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTTGCTTTGCTATTT 1371
Query 1379 CATTATTGCCATATGTTTCTTCGTCGACAAACTTCCCCAGA 1419
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 1372 CATTATTGCCATCTGTTTCTTCGTCGACAAACTTCCCCAGA 1412
> AT3G51860.1 | Symbols: CAX3, ATHCX1, CAX1-LIKE, ATCAX3 | cation
exchanger 3 | chr3:19239427-19242913 FORWARD LENGTH=1805
Length=1805
Score = 863 bits (467), Expect = 0.0
Identities = 1075/1360 (79%), Gaps = 76/1360 (6%)
Strand=Plus/Plus
Query 144 GAGAACGGGAACGCAAGCATGACGGCCAAAGGATCGAGTAGAGAACTGAGACTTGGAAGA 203
|||||||| ||||||| | |||| || ||||| ||||| || || ||| ||| ||| |||
Sbjct 68 GAGAACGGAAACGCAAACGTGACCGCGAAAGGCTCGAGCAGGGAGCTGCGACATGGGAGA 127
Query 204 ACAGCGCATAGCATGTCTTCTTCTTCTCTGAGGAAGAAATCAGACCTCCGAGTGATTCA- 262
||||| || | ||||||||| || || || ||||||||||||||||| || || ||||
Sbjct 128 ACAGCACACAACATGTCTTCATCGTCGCTAAGGAAGAAATCAGACCTGAGATTGGTTCAG 187
Query 263 AAAGGTTCCATACAAAGGACT-TAAAG-ATTTTCTCTCTAATCTTCAAGAAGTCATTCTC 320
||| ||||||| |||| ||| | ||| | ||||||||||||||||||||||||||||
Sbjct 188 AAA-GTTCCATGCAAA--ACTCTCAAGAACATTCTCTCTAATCTTCAAGAAGTCATTCTT 244
Query 321 GGAACAAAGCTTGCCAT-TCTT-TTTC-CGGCCATACCCGC-CGCCATTATTTG-CACTT 375
|| || |||||| | | |||| |||| | ||||| ||| | ||||||| ||| || ||
Sbjct 245 GGTACTAAGCTT-AC-TCTCTTATTTCTC-GCCAT-CCCTCTCGCCATT-CTTGCCAATT 299
Query 376 ATTGTGGCGT-CAGTCAG-CC-TTGGATATTTGGACTTAGCTTGCTAGGACTGACTCCTT 432
|| | | | ||| | || || |||||||||||| |||||| |||| ||||| |||
Sbjct 300 CTTACAAC-TACGGTC-GTCCGTT-GATATTTGGACTGAGCTTGATAGGGCTGACACCTC 356
Query 433 TGGCTGAGCGAGTCAGCTTTTTGACAGAGCAACTAGCTTTCTACACCGGTCCTACATTGG 492
| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 357 TAGCTGAGCGAGTTAGCTTTTTGACAGAGCAACTAGCTTTCTACACTGGTCCAACAGTGG 416
Query 493 GTGGTTTATTGAACGCAACTTGTGGAAACGCGACTGAATTGATAATCGCAATTCTTGCTT 552
| ||||| |||||||| ||||||||||||||||| || |||||||||| || || || |
Sbjct 417 GCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCGCGATACTAGCGT 476
Query 553 TGACCAATAACAAGGTCGCAGTGGTGAAATATTCGCTGCTAGGTTCGATTTTGTCGAACC 612
|| |||||||||| || |||||||||||||| || || | ||||| ||| | || ||||
Sbjct 477 TGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCTATTGGGTTCAATTCTCTCAAACC 536
Query 613 TTTTATTGGTTCTAGGGACTTCACTCTTCTGTGGAGGAATCGCTAATATCCGAAGGGAGC 672
|| | |||||||| || ||||| ||||||| ||| || ||||| |||||||| | ||||
Sbjct 537 TTCTCTTGGTTCTTGGCACTTCCCTCTTCTTTGGTGGTATCGCCAATATCCGCCGCGAGC 596
Query 673 AGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTACTTCTAATGGGTTTCTTGT 732
|||||||||||||||||||||||||||||||||||||||| || || ||||| | ||||
Sbjct 597 AGCGGTTCGACCGGAAACAAGCCGATGTGAACTTCTTCTTGCTGCTTATGGGCCTGTTGT 656
Query 733 GTCACTTGCTGCCATTGTTGGTGGAATACTTG--GCAAACGG-AAAGACT-TCG-GCTGC 787
|||| ||||||||||| ||| | |||| || |||| ||| ||| | ||| || |
Sbjct 657 GTCATTTGCTGCCATTATTGTTAAAATA--TGCAGCAACCGGCGAAG--TATCGACCT-C 711
Query 788 TGT-TTTGTCCGACATG-CAACTGAGTATATCGCGAGGC-TTCAGTATTGTTATG-TTGA 843
| | || | | ||| | || | | | ||||| | | ||| || |||||| || |
Sbjct 712 TATGATT-AACAAAATGTC-GCTCACTCTGTCGCG-GACAAGCAGCATAGTTATGCTT-A 767
Query 844 TCAG-TTACATCGCATATCTTGTTTTCCAACTTTGGACTCACCGCCAATTGTTCGATGCA 902
| | |||||| || ||||| | ||||| || |||||||||||||||||||| || |||
Sbjct 768 T-TGCTTACATTGCTTATCTCATCTTCCAGCTCTGGACTCACCGCCAATTGTTTGAGGCA 826
Query 903 C-A-A-GATCAGGAGGATG-AGTATGATGACGATG-T-G-GAGGAAGAAAC-CGCGGTTA 954
| | | ||| | || |||| | |||||||| || | | | | |||||||| | | || |
Sbjct 827 CAACAGGATGATGATGATGCA-TATGATGATGAGGTTAGTGTTGAAGAAACTC-CAGTGA 884
Query 955 TTA-GTTTTTGGAGCGGTTTTGTC-TGGTTGGTTGGGATGACACTCTTCATCGCATTGCT 1012
|| | || |||||||| |||| | ||| | |||||||||||| | |||||||||||||
Sbjct 885 -TAGGATTCTGGAGCGGATTTG-CTTGGCTCGTTGGGATGACAATAGTCATCGCATTGCT 942
Query 1013 ATCGGAGTATGTTGTAGCCACGATTGAGGAAGCATCAGA-TAAAT-GGAACTTATCAGTG 1070
||| ||||||||||| | |||||| ||||| ||||| || | || || || ||||||||
Sbjct 943 ATCAGAGTATGTTGTGGACACGATCGAGGATGCATCGGACT-CATGGGGAC-TATCAGTG 1000
Query 1071 AGTTTCATAAGCATCATATTGCTTCCTATTGTTGGAAACGCAGCTGAACATGCTGGAGCC 1130
|||||||||||||||||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct 1001 AGTTTCATAAGCATCATATTGCTTCCCATTGTTGGGAATGCGGCTGAGCATGCTGGAGCC 1060
Query 1131 GTTATTTTTGCCTTTAAGAACAAGCTCGACATATCTTT-GGGAGTTGCATTAGGCTCTGC 1189
| ||||| || || ||||||||||||||||||||| | ||| ||||| || ||||||||
Sbjct 1061 ATCATTTTCGCATTCAAGAACAAGCTCGACATATCTCTAGGG-GTTGCGTTGGGCTCTGC 1119
Query 1190 GACTCAGATTGGCTTA-TTCGTCGTCCCCTTGACCATCGTCGTGGCATGGATTTTGGGAA 1248
||||||||| ||| ||||| ||||| |||| | |||| || ||||| ||||||
Sbjct 1120 AACTCAGATTT-CTTTGTTCGTGGTCCCATTGAGTGTTATCGTTGCGTGGATCCTGGGAA 1178
Query 1249 TTAACATGGATCTCAA-TTTCGGTCTCCTCGAAACTGGCTGTCTTGCTGTTT-CCATTAT 1306
| || ||||||||||| ||| |||| |||||| ||| ||| ||| || |||||||
Sbjct 1179 TAAAAATGGATCTCAACTTTAACA-TCCTTGAAACTAGCTCTCTAGCT-TTGGCCATTAT 1236
Query 1307 CATCACAGCCTTCACATTACAGGATGGGAGTTCTCACTACATGAAGGGACTGGTCCTCTT 1366
||||||||||||||| ||||||||||| | |||||| ||||||||||||||||| || ||
Sbjct 1237 CATCACAGCCTTCACTTTACAGGATGGAACTTCTCATTACATGAAGGGACTGGTTCTATT 1296
Query 1367 GCTT-TGCTATTTCATTATTGCCATATGTTTCTTCGTCGAC-AAACTTCCCCAGAAACAA 1424
| || |||||| |||| || || ||||||||||||||| ||| ||||||| | |||
Sbjct 1297 G-TTATGCTATGTCATCATCGCGGCGTGTTTCTTCGTCGACCAAA-TTCCCCA-AC-CAA 1352
Query 1425 AATGCTATACACTTGGGACATCAAGCGATGAACAATGTTG 1464
| || | | || |||||| |||| | ||||||||| |||
Sbjct 1353 A-TGATTTGGACGTGGGACTTCAACCCATGAACAAT-TTG 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5