BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482841
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38300.1 | Symbols: | myb-like HTH transcriptional regulato... 1932 0.0
> AT2G38300.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr2:16043960-16045992 REVERSE LENGTH=1551
Length=1551
Score = 1932 bits (1046), Expect = 0.0
Identities = 1177/1238 (95%), Gaps = 18/1238 (1%)
Strand=Plus/Plus
Query 255 CAGAAGTAAAAATGATTCCAAGTATggagggaggcgagaagactaacagagaagacgagg 314
||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 303 CAGAAGTAATAATGATTCCAAGTATGGAGGGAGGCGGGAAGACTAACAGAGAAGAAGAGG 362
Query 315 agga-g--gcggaggaagaagaagaaggtgaagagagtaaggTTTCAAGCAATAGTACAG 371
|||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AGGAGGAAGAGGAAGAAGAAGAAGAAGGTGAAGAGAGTAAGGTTTCAAGCAATAGTACAG 422
Query 372 TGGAAGAGAGCGATAAGAAGACGAAGGTTAGGCCTTATGTGAGATCTAAAGTCCCTCGAC 431
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 423 TGGAAGAGAGCGACAAGAAGACTAAGGTTAGGCCTTATGTGAGATCTAAAGTCCCTCGAC 482
Query 432 TACGGTGGACTCCTGATCTTCATCTTCGCTTTGTCCGCGCGGTTGAGAGGCTTGGAGGTC 491
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 483 TCCGGTGGACTCCTGATCTTCATCTTCGCTTTGTCCGCGCCGTTGAGAGGCTTGGAGGTC 542
Query 492 AAGAAAGAGCAACTCCAAAGTTGGTTCGTCAGATGATGAACATCAAAGGGCTTAGTATTG 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AAGAAAGAGCAACTCCAAAGTTGGTTCGTCAGATGATGAACATCAAAGGGCTTAGTATTG 602
Query 552 CTCATGTCAAGAGCCATCTACAGATGTACAGAAGCAAGAAGATAGATGATCAAGGTCAAG 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 CTCATGTCAAGAGCCATCTACAGATGTACAGAAGCAAGAAGATAGATGATCAAGGTCAAG 662
Query 612 CCATAGCTGATCACAAACATCTCTTCGAGACTTCCACAGATCGAAATATTTATAAACTAA 671
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CTATAGCTGGTCACAAACATCTCTTCGAGACTTCCACAGATCGAAATATTTATAAACTAA 722
Query 672 GTCAGCTACCGATGTTCCGAGGCTATAATCGTAACTATGATTCTCCATTCAGATATGGAA 731
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 723 GTCAGCTACCGATGTTCCGAGGCTATAATCATAACCATGATTCTCCATTCAGATATGGAA 782
Query 732 GTAAATTTTCAAATGCTTCTTTGTGGAACTCTAGCTCTCACGGAACAGACCGGAGTTTGA 791
||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 783 GTAAAATTTCAAATGCTTCTTTGTGGAACTCTAGCTCTCAAGGAACAGAAAGGAGTTTGA 842
Query 792 TAGAACAAATTAGGCCCGGTTTAATCCGCAGCTCATCGGTTAGCAATAACATCCGTGGTA 851
|||| ||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 843 TAGACCAAATTAGGCCCGGTTTAATCCGCAACGCGTCGGTTAGCAATAACATCCGTGGTA 902
Query 852 GTGAATATTGGACTAACAACAGGTCTTTC-AAGAATATCTACTCTTCTTCAATTTCTAAT 910
|||| |||||||||||||||| ||||||| || || ||||||||||||||||||||||||
Sbjct 903 GTGATTATTGGACTAACAACAAGTCTTTCCAA-AACATCTACTCTTCTTCAATTTCTAAT 961
Query 911 CACTTACCGAAACTAAGACACGATCATCAAGAACGGACCAATCCAGTCACATTCAACAGC 970
||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 962 CACTTTCCGAAACTACGACACGATCATCACGAACGGACCAATTCAGTCACATTCAACAGC 1021
Query 971 ATGCAAGGACACTCAAGAACTTTTCAAAAGTTCCATATCGGTGTTGAAGAGAGCACTAAT 1030
|| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct 1022 ATTCAAGGACACTCAAGAACTTTTCAAAAGTTCCATAACGGTGTTGAGGAGAACACTAAT 1081
Query 1031 CATTCTTATTTTAGCAAGACAACA-GGCAAAAGAAACGCAAGTACGAGCATCGATCTTGA 1089
|||||||||| ||||||||||| | ||||||||| ||||||||| |||||| | ||
Sbjct 1082 CATTCTTATTGTAGCAAGACAA-ATGGCAAAAGAGACGCAAGTAGGAGCAT---T---GA 1134
Query 1090 TCTTGATCTATCTCTTAAGCTACGACAACCCGAGAAGACAATTTTGGAAGAGACAGAAAC 1149
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1135 TCTTGATCTATCTCTTAAGCTAAGACAACCGGAGAAGACAATTTTGGAAGAGACAGAAAC 1194
Query 1150 AGCAGCAACAACAACGGATCAAACGTTGTCCTTGTCGCTATGTCCAGGGTCGTCTTCGTG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AGCAGCAACAACAACGGATCAAACGTTGTCCTTGTCGCTATGTCCAGGGTCGTCTTCGTG 1254
Query 1210 GAAAAAGAGCCGACTGATAAAGAAAGGTGAAGAGGATCGGACGGTTAAGATTGGTCAGGC 1269
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1255 GAAAAAGAGCCGACTGAT---GAAAGATGAAGAGGATCGGACGGTTAAGATTGGTCAGG- 1310
Query 1270 A-AGTACTCTCGATCTGACTCTATGAATTATATTTAAGAATGAGACAAATTCTAAGTGAG 1328
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AGAGTACTCTGGATCTGACTCTATGAATTATATTTAAGAATGAGACAAATTCTAAGTGAG 1370
Query 1329 ATCTTGAGGTACTTACTGATATCTTAATATTCAGTGTCGTTGTTGTTTATCATTAATTAT 1388
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1371 ATCTTGAGGTACTTACCGATATCTTAATATTCAGTGTCGTTGTTGTTTATCATTAATCAT 1430
Query 1389 GTATTTTCTTAATTATTAGAAAGGAAACAAAAATGTTTGATTATATTAACGGTCTTGAGT 1448
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GTATTTTCTTTATTATTAGAAAGGAAACAAAAATGTTTGATTATATTAACGGTCTTGAGT 1490
Query 1449 TTGTTTGATACCGCCAACTTGTATCATCACATATATAA 1486
||||||||||||||||| ||||||||||||||||||||
Sbjct 1491 TTGTTTGATACCGCCAATTTGTATCATCACATATATAA 1528
Score = 327 bits (177), Expect = 1e-88
Identities = 235/260 (90%), Gaps = 15/260 (6%)
Strand=Plus/Plus
Query 1 AAATCAATTAGCTGTGAACAGAAAAGAACACTTTTTAACATATGCAACAAGATTTAGGTG 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2 AAATCAATTAGCTGTGAACAGAAAAGAAAACTTTTTAACATATGCAACAAGATTTAGGTG 61
Query 61 AGGGTTTGTCTACATGCTCC-GG--GA-AGAGAGAGAGAATCATAAGTGTATCTTGATCT 116
|||||||||||||||| ||| || || ||||||||||||||| ||||||||||||||||
Sbjct 62 AGGGTTTGTCTACATGTTCCGGGAAGAGAGAGAGAGAGAATCAGAAGTGTATCTTGATCT 121
Query 117 AGGGTTTCTCATCGACACAGACAAATCTCCATGCTTTGAACTAAGCAGAATTCATCTTGT 176
|||| | ||| | | || | ||||||||||||||||||||||||||||||||||| ||
Sbjct 122 AGGG--T-TCA-C-AGAC--A-AAATCTCCATGCTTTGAACTAAGCAGAATTCATCTGGT 173
Query 177 CTTTTATCTCTTTCATGTCAAACCAAAGGATTTGATCTATCCACT-TCTTCCAAAACCTT 235
|||||||||||||||| ||||||||||||||| |||||||||| | || ||||||||||
Sbjct 174 CTTTTATCTCTTTCATATCAAACCAAAGGATT-GATCTATCCA-TATCGTCCAAAACCTA 231
Query 236 TATCTAGCTACGCCAAGAAC 255
|||||||||| ||| |||||
Sbjct 232 TATCTAGCTAAGCCTAGAAC 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73292795700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5