BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482841 Length=1486 Score E Sequences producing significant alignments: (Bits) Value AT2G38300.1 | Symbols: | myb-like HTH transcriptional regulato... 1932 0.0 > AT2G38300.1 | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:16043960-16045992 REVERSE LENGTH=1551 Length=1551 Score = 1932 bits (1046), Expect = 0.0 Identities = 1177/1238 (95%), Gaps = 18/1238 (1%) Strand=Plus/Plus Query 255 CAGAAGTAAAAATGATTCCAAGTATggagggaggcgagaagactaacagagaagacgagg 314 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 303 CAGAAGTAATAATGATTCCAAGTATGGAGGGAGGCGGGAAGACTAACAGAGAAGAAGAGG 362 Query 315 agga-g--gcggaggaagaagaagaaggtgaagagagtaaggTTTCAAGCAATAGTACAG 371 |||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 AGGAGGAAGAGGAAGAAGAAGAAGAAGGTGAAGAGAGTAAGGTTTCAAGCAATAGTACAG 422 Query 372 TGGAAGAGAGCGATAAGAAGACGAAGGTTAGGCCTTATGTGAGATCTAAAGTCCCTCGAC 431 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 423 TGGAAGAGAGCGACAAGAAGACTAAGGTTAGGCCTTATGTGAGATCTAAAGTCCCTCGAC 482 Query 432 TACGGTGGACTCCTGATCTTCATCTTCGCTTTGTCCGCGCGGTTGAGAGGCTTGGAGGTC 491 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 483 TCCGGTGGACTCCTGATCTTCATCTTCGCTTTGTCCGCGCCGTTGAGAGGCTTGGAGGTC 542 Query 492 AAGAAAGAGCAACTCCAAAGTTGGTTCGTCAGATGATGAACATCAAAGGGCTTAGTATTG 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 AAGAAAGAGCAACTCCAAAGTTGGTTCGTCAGATGATGAACATCAAAGGGCTTAGTATTG 602 Query 552 CTCATGTCAAGAGCCATCTACAGATGTACAGAAGCAAGAAGATAGATGATCAAGGTCAAG 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 CTCATGTCAAGAGCCATCTACAGATGTACAGAAGCAAGAAGATAGATGATCAAGGTCAAG 662 Query 612 CCATAGCTGATCACAAACATCTCTTCGAGACTTCCACAGATCGAAATATTTATAAACTAA 671 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 CTATAGCTGGTCACAAACATCTCTTCGAGACTTCCACAGATCGAAATATTTATAAACTAA 722 Query 672 GTCAGCTACCGATGTTCCGAGGCTATAATCGTAACTATGATTCTCCATTCAGATATGGAA 731 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 723 GTCAGCTACCGATGTTCCGAGGCTATAATCATAACCATGATTCTCCATTCAGATATGGAA 782 Query 732 GTAAATTTTCAAATGCTTCTTTGTGGAACTCTAGCTCTCACGGAACAGACCGGAGTTTGA 791 ||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 783 GTAAAATTTCAAATGCTTCTTTGTGGAACTCTAGCTCTCAAGGAACAGAAAGGAGTTTGA 842 Query 792 TAGAACAAATTAGGCCCGGTTTAATCCGCAGCTCATCGGTTAGCAATAACATCCGTGGTA 851 |||| ||||||||||||||||||||||||| | | ||||||||||||||||||||||||| Sbjct 843 TAGACCAAATTAGGCCCGGTTTAATCCGCAACGCGTCGGTTAGCAATAACATCCGTGGTA 902 Query 852 GTGAATATTGGACTAACAACAGGTCTTTC-AAGAATATCTACTCTTCTTCAATTTCTAAT 910 |||| |||||||||||||||| ||||||| || || |||||||||||||||||||||||| Sbjct 903 GTGATTATTGGACTAACAACAAGTCTTTCCAA-AACATCTACTCTTCTTCAATTTCTAAT 961 Query 911 CACTTACCGAAACTAAGACACGATCATCAAGAACGGACCAATCCAGTCACATTCAACAGC 970 ||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 962 CACTTTCCGAAACTACGACACGATCATCACGAACGGACCAATTCAGTCACATTCAACAGC 1021 Query 971 ATGCAAGGACACTCAAGAACTTTTCAAAAGTTCCATATCGGTGTTGAAGAGAGCACTAAT 1030 || |||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| Sbjct 1022 ATTCAAGGACACTCAAGAACTTTTCAAAAGTTCCATAACGGTGTTGAGGAGAACACTAAT 1081 Query 1031 CATTCTTATTTTAGCAAGACAACA-GGCAAAAGAAACGCAAGTACGAGCATCGATCTTGA 1089 |||||||||| ||||||||||| | ||||||||| ||||||||| |||||| | || Sbjct 1082 CATTCTTATTGTAGCAAGACAA-ATGGCAAAAGAGACGCAAGTAGGAGCAT---T---GA 1134 Query 1090 TCTTGATCTATCTCTTAAGCTACGACAACCCGAGAAGACAATTTTGGAAGAGACAGAAAC 1149 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1135 TCTTGATCTATCTCTTAAGCTAAGACAACCGGAGAAGACAATTTTGGAAGAGACAGAAAC 1194 Query 1150 AGCAGCAACAACAACGGATCAAACGTTGTCCTTGTCGCTATGTCCAGGGTCGTCTTCGTG 1209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1195 AGCAGCAACAACAACGGATCAAACGTTGTCCTTGTCGCTATGTCCAGGGTCGTCTTCGTG 1254 Query 1210 GAAAAAGAGCCGACTGATAAAGAAAGGTGAAGAGGATCGGACGGTTAAGATTGGTCAGGC 1269 |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1255 GAAAAAGAGCCGACTGAT---GAAAGATGAAGAGGATCGGACGGTTAAGATTGGTCAGG- 1310 Query 1270 A-AGTACTCTCGATCTGACTCTATGAATTATATTTAAGAATGAGACAAATTCTAAGTGAG 1328 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1311 AGAGTACTCTGGATCTGACTCTATGAATTATATTTAAGAATGAGACAAATTCTAAGTGAG 1370 Query 1329 ATCTTGAGGTACTTACTGATATCTTAATATTCAGTGTCGTTGTTGTTTATCATTAATTAT 1388 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 1371 ATCTTGAGGTACTTACCGATATCTTAATATTCAGTGTCGTTGTTGTTTATCATTAATCAT 1430 Query 1389 GTATTTTCTTAATTATTAGAAAGGAAACAAAAATGTTTGATTATATTAACGGTCTTGAGT 1448 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1431 GTATTTTCTTTATTATTAGAAAGGAAACAAAAATGTTTGATTATATTAACGGTCTTGAGT 1490 Query 1449 TTGTTTGATACCGCCAACTTGTATCATCACATATATAA 1486 ||||||||||||||||| |||||||||||||||||||| Sbjct 1491 TTGTTTGATACCGCCAATTTGTATCATCACATATATAA 1528 Score = 327 bits (177), Expect = 1e-88 Identities = 235/260 (90%), Gaps = 15/260 (6%) Strand=Plus/Plus Query 1 AAATCAATTAGCTGTGAACAGAAAAGAACACTTTTTAACATATGCAACAAGATTTAGGTG 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2 AAATCAATTAGCTGTGAACAGAAAAGAAAACTTTTTAACATATGCAACAAGATTTAGGTG 61 Query 61 AGGGTTTGTCTACATGCTCC-GG--GA-AGAGAGAGAGAATCATAAGTGTATCTTGATCT 116 |||||||||||||||| ||| || || ||||||||||||||| |||||||||||||||| Sbjct 62 AGGGTTTGTCTACATGTTCCGGGAAGAGAGAGAGAGAGAATCAGAAGTGTATCTTGATCT 121 Query 117 AGGGTTTCTCATCGACACAGACAAATCTCCATGCTTTGAACTAAGCAGAATTCATCTTGT 176 |||| | ||| | | || | ||||||||||||||||||||||||||||||||||| || Sbjct 122 AGGG--T-TCA-C-AGAC--A-AAATCTCCATGCTTTGAACTAAGCAGAATTCATCTGGT 173 Query 177 CTTTTATCTCTTTCATGTCAAACCAAAGGATTTGATCTATCCACT-TCTTCCAAAACCTT 235 |||||||||||||||| ||||||||||||||| |||||||||| | || |||||||||| Sbjct 174 CTTTTATCTCTTTCATATCAAACCAAAGGATT-GATCTATCCA-TATCGTCCAAAACCTA 231 Query 236 TATCTAGCTACGCCAAGAAC 255 |||||||||| ||| ||||| Sbjct 232 TATCTAGCTAAGCCTAGAAC 251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73292795700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5