BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482843
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38320.1 | Symbols: TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 |... 2300 0.0
> AT2G38320.1 | Symbols: TBL34 | TRICHOME BIREFRINGENCE-LIKE 34
| chr2:16055289-16057980 FORWARD LENGTH=1538
Length=1538
Score = 2300 bits (1245), Expect = 0.0
Identities = 1391/1462 (95%), Gaps = 8/1462 (1%)
Strand=Plus/Plus
Query 25 ATATAGACAGCTACTG-AAATGTGATTGACCACCAAACTACAAAATAACTTCAAGAAGGC 83
|||||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 54 ATATAGACAGCTACAGAAAAT-TGATTGACCACCAAACAACAAAATAACTTCAAGAAGGC 112
Query 84 TGGAGTTAAAAGGCAAGTCAGAGAAAGacacatcaatataacccaaaac-aaacatcata 142
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 113 TGGAGTTAAAAGGCAAGTAAGAGAAAGACACATCAATATAACCCAAAACAAAACATCATA 172
Query 143 acaacaacaataacaaacacataaccaaTGGTAAAGCGACAACTGTTGATGCTAGGTATC 202
||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 173 ACAGCAACAATAACAGACACATAACCAATGGCAAAGCGACAACTGTTGATGCTGGGTATT 232
Query 203 AGAACTAGCTTTCATACTATCGCCGCCGTGCTTGTGGCCGGATTAATAGTCACTGCCGTG 262
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 233 AGAACTAGCTTTCATACTATCGCCGCCGTGCTTGTGGCCGGATTAATATTCACTGCCGTG 292
Query 263 TTTATGTCCCGAAACGGTTTGCTAAAGGAAAACCCTCAAAGAGACAGTG-TACCGGACCT 321
||| ||||| ||||| |||||| ||||||||| |||||||| || ||| || |||| |
Sbjct 293 TTTTTGTCCAGAAACAGTTTGCCAAAGGAAAATCCTCAAAGCCACGGTGTTA-CGGATCG 351
Query 322 CAGCGGCGACAGTAGCAAAGAATGTAATTTGTTCGAAGGGAAATGGGTATTTGATAATGA 381
| | || |||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 352 CGGAGGGGACAGTGGCAGAGAATGTAATTTGTTCGAAGGGAAATGGGTATTTGATAACGT 411
Query 382 ATCATACCCTCTTTATAAAGAAGAAGATTGCAAGTTTATGTCTGACCAGTTGGCTTGTGA 441
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 412 ATCATACCCTCTTTATAAAGAAGAAGATTGCAAGTTCATGTCTGACCAGTTGGCTTGTGA 471
Query 442 GAAGTTTGGGAGAAAAGATTTGAGTTACAAATTCTGGAGGTGGCAACCTCACACGTGTGA 501
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GAAGTTTGGGAGGAAAGATCTGAGTTACAAATTCTGGAGGTGGCAACCTCACACGTGTGA 531
Query 502 TCTTCCCAGGTTTAATGGAACGAAGTTGCTGGAGAGGCTAAGAAATAAGAGGATGGTATA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 532 TCTTCCCAGGTTTAATGGAACGAAGTTGCTGGAGAGGCTAAGAAATAAGAGGATGGTGTA 591
Query 562 CGTAGGAGACTCTTTGAACAGAGGCCAATGGGTATCGATGGTGTGTATGGTTAGTTCGGT 621
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 592 CGTAGGAGACTCTCTGAACAGAGGCCAATGGGTATCAATGGTGTGTATGGTTAGTTCGGT 651
Query 622 CATTACAAACCCAAAGGCGATGTATATGCACAACAATGGCTCTAACCTCATCACCTTCAA 681
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 652 AATTACAAACCCAAAGGCGATGTATATGCACAACAATGGCTCTAACCTCATCACGTTCAA 711
Query 682 AGCCCTCGAATACAATGCGACAATAGACTACTATTGGGCTCCTTTACTGGTGGAATCCAA 741
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 712 AGCTCTCGAATACAATGCTACAATAGACTACTATTGGGCTCCTTTGCTGGTGGAATCCAA 771
Query 742 CTCGGACGACCCGACAAACCATAGATTTCCTGATCGGATAGTTCGGATCCAATCGATAGA 801
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 772 CTCGGACGACCCGACAAACCATAGATTCCCCGATCGGATAGTTCGGATCCAATCAATAGA 831
Query 802 GAAACATGCGAGGCATTGGACGAACTCTAATATCATTGTTTTCAACTCTTATTTATGGTG 861
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 832 AAAACATGCAAGGCATTGGACGAACTCTGATATCATTGTTTTCAACTCTTACTTATGGTG 891
Query 862 GAGAATGCCTCATATCAAGTCACTGTGGGGATCATTTGAGAAGTTAGATGGAATATACAA 921
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 892 GAGAATGCCTCATATCAAGTCACTGTGGGGATCGTTTGAGAAATTAGATGGAATATACAA 951
Query 922 GGAAGTGGAGATGGTGAGAGTTTATGAGATGGCTTTGCAAACACTGTCTCAGTGGTTGGA 981
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 952 GGAAGTGGAGATGGTGAGAGTTTATGAAATGGCTTTGCAAACACTGTCTCAGTGGTTGGA 1011
Query 982 GGTTCACGTTAACCCCAATCTTACCAAACTTTTCTTCATGTCCATGTCTCCCACCCATGA 1041
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GGTTCACGTTAACCCCAATATTACCAAACTTTTCTTCATGTCCATGTCTCCCACCCATGA 1071
Query 1042 AAGGGCTGAAGAATGGGGAGGAAAACTTAATCAGAACTGTTATGGAGAAACTAGTCTAAT 1101
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1072 AAGGGCTGAAGAATGGGGAGGAATACTTAATCAGAACTGTTATGGAGAAGCTAGTCTAAT 1131
Query 1102 AGATAAAGAAGGATATACTGGAAAAGGTTCAGATCCAAAGATGATGAGAGTCTTAGAAAA 1161
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1132 AGATAAAGAAGGATATACTGGAAGAGGGTCAGATCCAAAGATGATGAGAGTCTTAGAAAA 1191
Query 1162 TGTGCTTGACGGGCTAAAAAATCGAGGATTAAATATGCAGATGATAAACATTACGCAACT 1221
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1192 TGTGCTTGACGGGCTAAAAAATCGAGGATTAAACATGCAGATGATAAACATTACGCAACT 1251
Query 1222 ATCAGAGTATCGAAAAGAAGGTCATCCTTCGATCTACAGAAAACAATGGGGAACAGTGAA 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 ATCAGAGTATCGAAAAGAAGGTCATCCTTCGATCTACAGAAAACAATGGGGAACAGTGAA 1311
Query 1282 GGAAAATGAACTCTCGAATCCAAGTAGTAATGCAGATTGCATACATTGGTGTTTGCCTGG 1341
|||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1312 GGAAAATGAAATCTCGAATCCAAGTAGTAACGCAGATTGTATACATTGGTGTTTGCCTGG 1371
Query 1342 AGTTCCTGATGTTTGGAATGAACTCCTTTATGCTTATATTCTTGACCATCACTCTAGTTG 1401
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1372 AGTTCCTGATGTTTGGAATGAACTCCTTTATGCTTATATTCTTGACCATCATTCTAGTTG 1431
Query 1402 AAAACTACTATTACATCttttttttttCTTCTACCTATTCCACTTCAATTGTACAGCTGA 1461
||||||||||||| ||||||| ||||| || |||||||||||||||||||||||| |||
Sbjct 1432 AAAACTACTATTATATCTTTTGTTTTT-TT--ACCTATTCCACTTCAATTGTACAGTTGA 1488
Query 1462 TTTTATTACTCTCACTTATTTT 1483
||| |||||||||||| ||||
Sbjct 1489 TTTCCTTACTCTCACTTCTTTT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5