BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482844
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38330.1 | Symbols: | MATE efflux family protein | chr2:160... 1544 0.0
> AT2G38330.1 | Symbols: | MATE efflux family protein | chr2:16064503-16067437
FORWARD LENGTH=1753
Length=1753
Score = 1544 bits (836), Expect = 0.0
Identities = 898/928 (97%), Gaps = 3/928 (0%)
Strand=Plus/Plus
Query 872 TTGCGGGGAATGTTCTTAATGCGATATTAGATCCAATCCTGATATTTGTCCTTGGTTTTG 931
||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 805 TTGCGGGGAATGTACTTAATGCGGTATTGGATCCAATCCTGATATTTGTCCTTGGTTTTG 864
Query 932 GTATCTCTGGTGCTGCAGCTGCTACCGTGATTTCTGAATACTTGATTGCATTTATTCTTC 991
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 865 GTATCTCTGGTGCTGCGGCTGCTACTGTGATTTCTGAATACTTGATTGCATTTATTCTTC 924
Query 992 TGTGGAAGTTGAATGAGAATGTAGTTTTGCTCTCTCCTCAAATCAAAGTGGGAAGAGCCA 1051
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TATGGAAGTTGAATGAGAATGTAGTTTTGCTCTCTCCTCAAATCAAAGTGGGAAGAGCCA 984
Query 1052 ACCAGTACCTCAAATCAGGTGGGCTTCTGATTGGTAGAACGGTGGCTTTGCTTGTGCCAT 1111
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 985 ACCAGTACCTCAAATCAGGTGGGCTTCTCATTGGTAGAACGGTGGCTTTGCTTGTGCCAT 1044
Query 1112 TCACATTAGCTACTTCGTTAGCAGCTCAAAATGGACCCACTCAAATGGCTGGCCATCAAA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TCACATTAGCTACTTCGTTAGCAGCTCAAAATGGACCCACTCAAATGGCTGGCCATCAAA 1104
Query 1172 TCGTCTTGGAAGTCTGGTTGGCTGTCTCTTTACTCACCGATGCTTTAGCCATTGCTGCAC 1231
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TCGTCTTGGAAATCTGGTTGGCTGTCTCTTTACTCACCGATGCTTTAGCCATTGCTGCAC 1164
Query 1232 AGAGTCTTCTTGCCACCACTTTCTCTCAAGGAGAATACAAACAAGCCCGGGAAGTTATCT 1291
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1165 AGAGTCTTCTTGCCACCACTTACTCTCAAGGAGAATACAAACAAGCCCGGGAAGTTCTCT 1224
Query 1292 TCGGAGTCCTTCAAGTAGGATTAGCAACTGGAACTGGTTTGGCTGCTGTATTGTTCATCA 1351
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 TCGGAGTCCTTCAAGTAGGTTTAGCAACTGGAACTGGTTTGGCTGCTGTATTGTTCATCA 1284
Query 1352 CTTTCGAACCATTTTCAAGCTTATTCACAACGGATTCAGAAGTTCTAAAGATTGCTTTGT 1411
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1285 CTTTCGAACCATTTTCAAGCTTATTCACAACGGATTCAGAAGTTTTAAAGATTGCTTTGT 1344
Query 1412 CAGGGACCTTGTTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGGATG 1471
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 CAGGGACCTTATTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGGATG 1404
Query 1472 GGCTTTATTATGGTGTCTCTGACTTTGGATTTGCCGCCTATTCTATGGTGATTGTCGGAT 1531
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1405 GGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATGGTGATTGTCGGAT 1464
Query 1532 TCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACGTTTGGCCTTGCCGGGATCTGGA 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 TCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACGTTTGGCCTTGCCGGGATCTGGA 1524
Query 1592 CTGGTTTATTCCTCTTCATGGCATTGCGGTTGGTTGCCGGAGCCTGGAGATTGGGAACAA 1651
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 1525 CTGGTTTGTTCCTCTTCATGGCGTTGCGGTTGGTTGCTGGAGCCTGGAGATTGGGGACAA 1584
Query 1652 GAACCGGTCCATGGAAAATGCTGTGGTCTGCTCCAGAGAAGCCAGAATGAGAG-GGATCG 1710
|||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1585 GAACCGGTCCATGGAAAATGCTATGGTCTGCTCCAGAGAAGCCAGAATGA-AGCGGATCA 1643
Query 1711 TTGTTTTTTGCGGTATGATGCGTGACTCTTAAGTTAAGATAA-TGAAAATGTAGTAAACT 1769
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1644 CTGTTTTTTGCGGTATGATGCGTGACTCTTAAGTTAAGATAAATGAAAATGGAGTAAACT 1703
Query 1770 AACAGTGTAAAAAACAGAGTCTTATAGT 1797
|||| ||||||||||| ||||| |||||
Sbjct 1704 AACAATGTAAAAAACATAGTCTCATAGT 1731
Score = 1140 bits (617), Expect = 0.0
Identities = 760/825 (92%), Gaps = 26/825 (3%)
Strand=Plus/Plus
Query 1 GAACATCATCATGTGGctctctttcttcctcctccgccgagatttttctccgtctctctc 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAACATCAACATGTGGCTCTCTTTCTTCCTCCTCCGCCGAGATTTTTCTCCGTCTCTC-G 59
Query 61 ttctccgCAATGGCGGCGGTCGCAACCTCCTTCTGTTTCTCTCCCCTTCGATCGCCGTCA 120
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 60 TTCTCCGCAATGGCGGCGGTCGCTACCTCCTTCTGTTTCTCTCCCCATCGATCGCCG--- 116
Query 121 CTTTTCCAACTCCACAATCTTTCTCTAAACCCTAATTCATCGATTCGAAGAACAATCCTC 180
| ||| ||| | ||||||||||||||| ||||||||||||||| ||
Sbjct 117 ----------T-CAC---GTTT-TGGAAACCCTAATTCATCCATTCGAAGAACAATCGTC 161
Query 181 TGTAAATCATCGCCTCGCGATGAATCTCCCGCCGTCACCGCTTCTTCTCGGCGACCGGAA 240
||||||||||| ||||||||||||||||| |||||| || ||||||||| ||||||||||
Sbjct 162 TGTAAATCATCTCCTCGCGATGAATCTCCAGCCGTCTCCACTTCTTCTCAGCGACCGGAA 221
Query 241 AAACAGCAGAAT-CTAGTGGA-ATCTC---CCAAACCGGATCCTGATCACAAACCGGATC 295
|| ||||||||| || | || || | |||||||||| |||||||||||||||||
Sbjct 222 AAGCAGCAGAATCCT-CT-GACTTCACAGAATAAACCGGATCATGATCACAAACCGGATC 279
Query 296 CTGGGATTGGTAAAATTGGAATGGAGATTATGTCAATTGCCTTACCTGCTGCTTTAGCTT 355
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 280 CTGGGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATTAGCTT 339
Query 356 TAGCTGCTGATCCTATAACATCTCTTGTCGACACTGCCTTCGTTGGCCATATTGGTTCTG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TAGCTGCTGATCCTATAACATCTCTTGTCGACACTGCCTTCGTTGGCCATATTGGTTCTG 399
Query 416 CAGAATTAGCTGCAGTAGGAGTATCAGTTTCTGTATTCAATTTGGTGTCGAAGCTCTTCA 475
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 400 CGGAATTAGCTGCAGTAGGAGTGTCAGTTTCTGTATTCAATTTGGTGTCGAAGCTCTTCA 459
Query 476 ATGTTCCTTTGCTAAATGTCACAACATCGTTTGTTGCGGAGGAGCAAGCAATTGCTGCTA 535
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATGTTCCTTTACTAAATGTCACAACATCGTTTGTTGCGGAGGAGCAAGCAATTGCTGCTA 519
Query 536 AGGATGATAGTGATTCTATAGAAACAAGCAAGAAAGTGCTGCCTTCTGTTTCAACATCTT 595
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 520 AGGATGATAATGATTCTATAGAAACAAGCAAGAAAGTGCTGCCTTCGGTTTCAACTTCAT 579
Query 596 TAGTTCTTGCTGCTGGAGTTGGTATTGCAGAGGCGATTGCGCTATCTCTCGGCTCTGATT 655
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 580 TAGTTCTTGCTGCTGGAGTTGGTATTGCAGAGGCCATTGCGCTATCTCTCGGGTCTGATT 639
Query 656 TCTTGATGGACGTCATGGCTATACCTTTTGATTCACCAATGCGGATACCAGCAGAGCAGT 715
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TCTTGATGGATGTCATGGCTATACCTTTTGATTCACCAATGCGGATACCAGCAGAGCAGT 699
Query 716 TCCTCAGACTTAGAGCGTATGGTGCACCACCAATTGTAGTGGCATTGGCTGCGCAAGGAG 775
||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 700 TCCTCAGACTTCGAGCGTATGGTGCACCACCAATTGTTGTTGCATTGGCTGCGCAAGGAG 759
Query 776 CTTTTCGAGGTTTCAAAGACACAACAACGCCTCTATATGCAGTTG 820
|||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 760 CTTTTCGAGGTTTCAAGGACACAACAACGCCTCTATATGCCGTTG 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88905165195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5