BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482844 Length=1797 Score E Sequences producing significant alignments: (Bits) Value AT2G38330.1 | Symbols: | MATE efflux family protein | chr2:160... 1544 0.0 > AT2G38330.1 | Symbols: | MATE efflux family protein | chr2:16064503-16067437 FORWARD LENGTH=1753 Length=1753 Score = 1544 bits (836), Expect = 0.0 Identities = 898/928 (97%), Gaps = 3/928 (0%) Strand=Plus/Plus Query 872 TTGCGGGGAATGTTCTTAATGCGATATTAGATCCAATCCTGATATTTGTCCTTGGTTTTG 931 ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 805 TTGCGGGGAATGTACTTAATGCGGTATTGGATCCAATCCTGATATTTGTCCTTGGTTTTG 864 Query 932 GTATCTCTGGTGCTGCAGCTGCTACCGTGATTTCTGAATACTTGATTGCATTTATTCTTC 991 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 865 GTATCTCTGGTGCTGCGGCTGCTACTGTGATTTCTGAATACTTGATTGCATTTATTCTTC 924 Query 992 TGTGGAAGTTGAATGAGAATGTAGTTTTGCTCTCTCCTCAAATCAAAGTGGGAAGAGCCA 1051 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925 TATGGAAGTTGAATGAGAATGTAGTTTTGCTCTCTCCTCAAATCAAAGTGGGAAGAGCCA 984 Query 1052 ACCAGTACCTCAAATCAGGTGGGCTTCTGATTGGTAGAACGGTGGCTTTGCTTGTGCCAT 1111 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 985 ACCAGTACCTCAAATCAGGTGGGCTTCTCATTGGTAGAACGGTGGCTTTGCTTGTGCCAT 1044 Query 1112 TCACATTAGCTACTTCGTTAGCAGCTCAAAATGGACCCACTCAAATGGCTGGCCATCAAA 1171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 TCACATTAGCTACTTCGTTAGCAGCTCAAAATGGACCCACTCAAATGGCTGGCCATCAAA 1104 Query 1172 TCGTCTTGGAAGTCTGGTTGGCTGTCTCTTTACTCACCGATGCTTTAGCCATTGCTGCAC 1231 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1105 TCGTCTTGGAAATCTGGTTGGCTGTCTCTTTACTCACCGATGCTTTAGCCATTGCTGCAC 1164 Query 1232 AGAGTCTTCTTGCCACCACTTTCTCTCAAGGAGAATACAAACAAGCCCGGGAAGTTATCT 1291 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1165 AGAGTCTTCTTGCCACCACTTACTCTCAAGGAGAATACAAACAAGCCCGGGAAGTTCTCT 1224 Query 1292 TCGGAGTCCTTCAAGTAGGATTAGCAACTGGAACTGGTTTGGCTGCTGTATTGTTCATCA 1351 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1225 TCGGAGTCCTTCAAGTAGGTTTAGCAACTGGAACTGGTTTGGCTGCTGTATTGTTCATCA 1284 Query 1352 CTTTCGAACCATTTTCAAGCTTATTCACAACGGATTCAGAAGTTCTAAAGATTGCTTTGT 1411 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1285 CTTTCGAACCATTTTCAAGCTTATTCACAACGGATTCAGAAGTTTTAAAGATTGCTTTGT 1344 Query 1412 CAGGGACCTTGTTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGGATG 1471 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1345 CAGGGACCTTATTTGTGGCTGGATCTCAACCGGTGAATGCTCTAGCGTTTGTTTTGGATG 1404 Query 1472 GGCTTTATTATGGTGTCTCTGACTTTGGATTTGCCGCCTATTCTATGGTGATTGTCGGAT 1531 |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1405 GGCTCTATTATGGTGTCTCTGACTTCGGATTTGCCGCTTATTCTATGGTGATTGTCGGAT 1464 Query 1532 TCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACGTTTGGCCTTGCCGGGATCTGGA 1591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1465 TCATATCTTCCTTGTTCATGCTTGTGGCTGCACCAACGTTTGGCCTTGCCGGGATCTGGA 1524 Query 1592 CTGGTTTATTCCTCTTCATGGCATTGCGGTTGGTTGCCGGAGCCTGGAGATTGGGAACAA 1651 ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||| Sbjct 1525 CTGGTTTGTTCCTCTTCATGGCGTTGCGGTTGGTTGCTGGAGCCTGGAGATTGGGGACAA 1584 Query 1652 GAACCGGTCCATGGAAAATGCTGTGGTCTGCTCCAGAGAAGCCAGAATGAGAG-GGATCG 1710 |||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| Sbjct 1585 GAACCGGTCCATGGAAAATGCTATGGTCTGCTCCAGAGAAGCCAGAATGA-AGCGGATCA 1643 Query 1711 TTGTTTTTTGCGGTATGATGCGTGACTCTTAAGTTAAGATAA-TGAAAATGTAGTAAACT 1769 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1644 CTGTTTTTTGCGGTATGATGCGTGACTCTTAAGTTAAGATAAATGAAAATGGAGTAAACT 1703 Query 1770 AACAGTGTAAAAAACAGAGTCTTATAGT 1797 |||| ||||||||||| ||||| ||||| Sbjct 1704 AACAATGTAAAAAACATAGTCTCATAGT 1731 Score = 1140 bits (617), Expect = 0.0 Identities = 760/825 (92%), Gaps = 26/825 (3%) Strand=Plus/Plus Query 1 GAACATCATCATGTGGctctctttcttcctcctccgccgagatttttctccgtctctctc 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAACATCAACATGTGGCTCTCTTTCTTCCTCCTCCGCCGAGATTTTTCTCCGTCTCTC-G 59 Query 61 ttctccgCAATGGCGGCGGTCGCAACCTCCTTCTGTTTCTCTCCCCTTCGATCGCCGTCA 120 ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 60 TTCTCCGCAATGGCGGCGGTCGCTACCTCCTTCTGTTTCTCTCCCCATCGATCGCCG--- 116 Query 121 CTTTTCCAACTCCACAATCTTTCTCTAAACCCTAATTCATCGATTCGAAGAACAATCCTC 180 | ||| ||| | ||||||||||||||| ||||||||||||||| || Sbjct 117 ----------T-CAC---GTTT-TGGAAACCCTAATTCATCCATTCGAAGAACAATCGTC 161 Query 181 TGTAAATCATCGCCTCGCGATGAATCTCCCGCCGTCACCGCTTCTTCTCGGCGACCGGAA 240 ||||||||||| ||||||||||||||||| |||||| || ||||||||| |||||||||| Sbjct 162 TGTAAATCATCTCCTCGCGATGAATCTCCAGCCGTCTCCACTTCTTCTCAGCGACCGGAA 221 Query 241 AAACAGCAGAAT-CTAGTGGA-ATCTC---CCAAACCGGATCCTGATCACAAACCGGATC 295 || ||||||||| || | || || | |||||||||| ||||||||||||||||| Sbjct 222 AAGCAGCAGAATCCT-CT-GACTTCACAGAATAAACCGGATCATGATCACAAACCGGATC 279 Query 296 CTGGGATTGGTAAAATTGGAATGGAGATTATGTCAATTGCCTTACCTGCTGCTTTAGCTT 355 |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 280 CTGGGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATTAGCTT 339 Query 356 TAGCTGCTGATCCTATAACATCTCTTGTCGACACTGCCTTCGTTGGCCATATTGGTTCTG 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 TAGCTGCTGATCCTATAACATCTCTTGTCGACACTGCCTTCGTTGGCCATATTGGTTCTG 399 Query 416 CAGAATTAGCTGCAGTAGGAGTATCAGTTTCTGTATTCAATTTGGTGTCGAAGCTCTTCA 475 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 400 CGGAATTAGCTGCAGTAGGAGTGTCAGTTTCTGTATTCAATTTGGTGTCGAAGCTCTTCA 459 Query 476 ATGTTCCTTTGCTAAATGTCACAACATCGTTTGTTGCGGAGGAGCAAGCAATTGCTGCTA 535 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 ATGTTCCTTTACTAAATGTCACAACATCGTTTGTTGCGGAGGAGCAAGCAATTGCTGCTA 519 Query 536 AGGATGATAGTGATTCTATAGAAACAAGCAAGAAAGTGCTGCCTTCTGTTTCAACATCTT 595 ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| || | Sbjct 520 AGGATGATAATGATTCTATAGAAACAAGCAAGAAAGTGCTGCCTTCGGTTTCAACTTCAT 579 Query 596 TAGTTCTTGCTGCTGGAGTTGGTATTGCAGAGGCGATTGCGCTATCTCTCGGCTCTGATT 655 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 580 TAGTTCTTGCTGCTGGAGTTGGTATTGCAGAGGCCATTGCGCTATCTCTCGGGTCTGATT 639 Query 656 TCTTGATGGACGTCATGGCTATACCTTTTGATTCACCAATGCGGATACCAGCAGAGCAGT 715 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 TCTTGATGGATGTCATGGCTATACCTTTTGATTCACCAATGCGGATACCAGCAGAGCAGT 699 Query 716 TCCTCAGACTTAGAGCGTATGGTGCACCACCAATTGTAGTGGCATTGGCTGCGCAAGGAG 775 ||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 700 TCCTCAGACTTCGAGCGTATGGTGCACCACCAATTGTTGTTGCATTGGCTGCGCAAGGAG 759 Query 776 CTTTTCGAGGTTTCAAAGACACAACAACGCCTCTATATGCAGTTG 820 |||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 760 CTTTTCGAGGTTTCAAGGACACAACAACGCCTCTATATGCCGTTG 804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88905165195 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5