BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482845
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38340.1 | Symbols: DREB19 | Integrase-type DNA-binding supe... 1090 0.0
> AT2G38340.1 | Symbols: DREB19 | Integrase-type DNA-binding superfamily
protein | chr2:16067396-16068291 REVERSE LENGTH=896
Length=896
Score = 1090 bits (590), Expect = 0.0
Identities = 738/807 (91%), Gaps = 20/807 (2%)
Strand=Plus/Plus
Query 50 TAAT-TTTTCTACAGTTtgt--gtgttgtgtgtgtACAATGGAAAAGGAAGATAACGGAT 106
|||| ||||||||||||||| ||||||||| | | ||||||||||||||||||||||||
Sbjct 73 TAATATTTTCTACAGTTTGTACGTGTTGTGTTTTTCCAATGGAAAAGGAAGATAACGGAT 132
Query 107 CGAAACAGAGCTCCTCTGCTTCTGTTGTATCCTCGagaagaagaagaagaagaGTGGTTG 166
||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 133 CGAAACAGAGCTCCTCTGCTTCTGTTGTATCCTCGAGAAGACGAAGAAGA-G--TGGTTG 189
Query 167 AGCCAGTGGAAGCGACGTTACAGAGATGGGAGGAGGAAGGGTTGGCTAAAGCTCGTAAGG 226
|||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||| ||
Sbjct 190 AGCCAGTGGAAGCGACGTTACAGAGATGGGAGGAAGAAGGATTGGCGAGAGCTCGTAGGG 249
Query 227 TTCAAGCTAAAGGTTCGAAGAAAGGTTGTATGAGAGGAAAAGGCGGACCAGAGAATCCGG 286
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 250 TTCAAGCCAAAGGTTCGAAGAAAGGTTGTATGAGAGGAAAAGGTGGACCAGAGAATCCTG 309
Query 287 TTTGTCGGTTTAGAGGTGTTCGACAGAGGGTTTGGGGGAAATGGGTTGCTGAGATACGTG 346
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 310 TTTGTCGGTTTAGAGGTGTTCGACAAAGGGTTTGGGGGAAATGGGTTGCTGAGATACGTG 369
Query 347 AACCAGTGAGCCACCGTGGTGCAAACTCGAGTCGTAGTAAACGCCTTTGGCTTGGAACGT 406
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 370 AACCAGTGAGTCACCGTGGTGCAAACTCTAGTCGTAGTAAACGGCTTTGGCTTGGCACGT 429
Query 407 TCGCTACTGCAGCCGAAGCCGCCTTGGCTTACGACAGAGCTGCTAGTGTCATGTACGGAC 466
| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 430 TTGCTACTGCAGCTGAAGCTGCTTTGGCTTACGACAGAGCTGCTAGTGTCATGTACGGAC 489
Query 467 CCTATGCCCGGTTAAATTTCCCGGAAGATTTGGGTGGAGAAATGAAGAAGGACGAGGAGG 526
|||||||| |||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 490 CCTATGCCAGGTTAAATTTCCCGGAAGATTTGGGTGGGGGAAGGAAGAAGGACGAGGAGG 549
Query 527 CGGAAACTTCGGGAGGATATTGGTTGGAAACTGACAAATCTGGTCATGGCGTGATTGAAA 586
|||||| ||||||||| ||||||||||||||| ||||| | ||| |||||||||||||||
Sbjct 550 CGGAAAGTTCGGGAGGCTATTGGTTGGAAACTAACAAAGCCGGTAATGGCGTGATTGAAA 609
Query 587 CGAAAGATCGAAAGGACTATGTAGTCTACAACGAAGACGCTATTGAGCTTGGCCATGACA 646
|| ||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 610 CGGAAGGTGGAAAAGACTATGTAGTCTACAATGAAGACGCTATTGAGCTTGGCCATGACA 669
Query 647 AGACTGAGAATCCTAT---T-A-A-TGA----G--AACCCATCAGTGAAATCAGAGGAAA 694
||||| |||||||||| | | | ||| | |||||| |||||||||||||||||
Sbjct 670 AGACTCAGAATCCTATGACTGATAATGAAATAGTGAACCCAGCAGTGAAATCAGAGGAAG 729
Query 695 ATTACAGCTTTGAACGATTCAAATTGGAAAATGGATTGATGTACAATGAACCTCAAGGCT 754
|||||||| ||| |||||||||||||| || |||||| |||| |||||||||||| |||
Sbjct 730 GTTACAGCTATGATCGATTCAAATTGGATAACGGATTGTTGTATAATGAACCTCAAAGCT 789
Query 755 CCAGTTATCACCAGGGAGGTGGATTCGATTCATATTTAGAGTTTTTCAGATTCTAGCTTA 814
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 790 CCAGTTATCACCAGGGAGGTGGATTCGATTCATATTTTGAGTATTTCAGATTCTAGCTTA 849
Query 815 GTG-TTTATGCTGCATCAATATACTAT 840
| | |||||||||||||||||||||||
Sbjct 850 G-GATTTATGCTGCATCAATATACTAT 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5