BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482846
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38360.1 | Symbols: PRA1.B4 | prenylated RAB acceptor 1.B4 |... 1369 0.0
> AT2G38360.1 | Symbols: PRA1.B4 | prenylated RAB acceptor 1.B4
| chr2:16069615-16070589 REVERSE LENGTH=975
Length=975
Score = 1369 bits (741), Expect = 0.0
Identities = 896/964 (93%), Gaps = 37/964 (4%)
Strand=Plus/Plus
Query 1 CCCAATTCTTCAATTTCTTCAACCCTAATTCTTCTCTGTTTCTCAGATCTACCAAAACTT 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 21 CCCAATTCTTCAATTTCTTCAACCCTAATTCTTCTCTCTTTCTCAGATCTACC-AAACTT 79
Query 61 GATCAATTCAATCTCCAATGGCTTCCTCAGCACCACCAGTCCTCCCAATCTCCAACCCCC 120
| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 80 G---------ATCTCCAATGGCTTCCTCAGCACCACCAGTCCTCCCAATCTCCAATCCCC 130
Query 121 AAACTGTTCCATCCGCCGCTCCTTCCTCCGTCGAATCTCAACCACCGATCGCAACTCCAG 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 131 AAACCGTTCCATCCGCCGCTCCTTCCTCCGTCGAATCTCAACCACCGATCGCTACTCCAG 190
Query 181 CTTTCCGCAATTTCATCAATCAGATCACCGAAACCGTCAAAAACGGTCTCTCTAAGCGTC 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 191 CTTTCCGCAATTTCATCAATCAGATCACCGAAACCGTTAAAAACGGTCTCTCTAAGCGTC 250
Query 241 GTCCTTGGGCTGAGCTCGCGGATCGCTCCGCATTATCCAAACCTGACTCGATCTCCGACG 300
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 251 GTCCTTGGGCTGAGCTCGCGGATCGTTCCGCATTATCCAAACCTGAGTCGATCTCCGACG 310
Query 301 CTGCTGTTCGTATCCGCAAGAATTACTCGTATTTCAAGGTTAATTACCTCACCGTCGCTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CTGCTGTTCGTATCCGCAAGAATTACTCGTATTTCAAGGTTAATTACCTCACCGTCGCTA 370
Query 361 CAGCGATCGTCGGATtctctctcgtgactcatcctttctctctcgttttcctcctctgtc 420
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 371 CAGCGATCGTCGGATTCTCTCTCGTCACTCATCCTTTCTCTCTCGTCTTCCTCCTCTGTC 430
Query 421 tcctcgcgtcgtggctctTCCTTTACCTCTTCCGTCCCACCGATCAGCCGATCGT-CGTC 479
|||||||||||||||||||||| ||| | ||||||||||| |||||||||||||| | |
Sbjct 431 TCCTCGCGTCGTGGCTCTTCCTCTACTTGTTCCGTCCCACGGATCAGCCGATCGTTC-TA 489
Query 480 TTCGGTCGTACATTCTCCGATCGTGAGACGTTAGGGTGTTTGATTTTGTTCAGTATCTTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TTCGGTCGTACATTCTCCGATCGTGAGACGTTAGGGTGTTTGATTTTGTTCAGTATCTTT 549
Query 540 GTGATTTTCCTCACCGATGTTGGATCTGTTCTTGTTTCGGCTATGATGGTTGGTGTTGCG 599
||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 550 GTGATCTTCCTCACCGATGTTGGATCTGTTCTGGTTTCGGCTATGATGATTGGTGTTGCG 609
Query 600 TTGATCTGTGCTCATGGTGCTTTTAGAGCTCCGGAAGATCTTTTCCTTGATGAGCAAGAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TTGATCTGTGCTCATGGTGCTTTTAGAGCTCCGGAAGATCTTTTCCTTGATGAGCAAGAG 669
Query 660 CCAGCTGCTACCGGATTCCTCTCTTTCCTCGGTGGCGCCGCCTCTTCAGCCGCGCCAGCT 719
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 670 CCTGCTGCTACCGGATTCCTCTCTTTCCTCGGTGGTGCCGCCTCTTCAGCCGCGCCTGCT 729
Query 720 GTCATCGCCGCTCGCGTGTAATTGCGACTCCGATCTACCATTCCCTCGCTTGGATAAATC 779
|| |||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||
Sbjct 730 GTTATCGCCGCTCGCGTGTAAATGCGATTCCGATCTACCATTCCCTCGCCTGGGTAAATC 789
Query 780 TTTCTATATGATTCGTTTGTTGAATTTGATACTTAG-----G-------AA-C--AA--- 821
|||||||||||||| ||||||||||||||||||||| | || | ||
Sbjct 790 TTTCTATATGATTCATTTGTTGAATTTGATACTTAGATTTTGTTTTTTTAATCTGAAAAC 849
Query 822 --TAAACGA-AAAAT-T-GTGGATCTGGCCTAATTTTGGTTCTTGTTTATGGGGCAAT-G 875
|||||| ||||| | ||||||||||||||||||||||||||||| ||||| |||| |
Sbjct 850 AATAAACGTGAAAATGTTGTGGATCTGGCCTAATTTTGGTTCTTGTTCATGGG-CAATAG 908
Query 876 CTATAGATGAAATATATACCTTTGAATGATTTTGATTTGAAGAAGTTTTACTACCGTTTT 935
|||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 909 CTATAGATGAAATATATATCTTTGCATGATTTTGATTTGATGAAGTTTTACTACCGTTTT 968
Query 936 GTGT 939
||||
Sbjct 969 GTGT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5