BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482852
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38420.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2222 0.0
> AT2G38420.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:16091093-16092549 FORWARD LENGTH=1457
Length=1457
Score = 2222 bits (1203), Expect = 0.0
Identities = 1346/1416 (95%), Gaps = 5/1416 (0%)
Strand=Plus/Plus
Query 1 TCATGGCACCGAATGTCAAATTTCATGAGAAAGTATCGAAAAATTCCTCAGTCATCTTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 16 TCATGGCACCGAATGTCAAATTTCATGAGAAAGTATCGAAAAATTCCTCATTCGTCTTTC 75
Query 61 AAAACCAAATGGAATGAGAATCTCAAGCAAAAATACGCCATGGAAGAGCTAAGAAGCAAT 120
|||||||||||||| |||||||||||||| || || |||||||||||||||||||||||
Sbjct 76 AAAACCAAATGGAACGAGAATCTCAAGCAGAAGTATGCCATGGAAGAGCTAAGAAGCAAC 135
Query 121 CTTCTCGCAGATTCAGAGAATGGTTCTGTTATGCGAACCCTCGTAAGCTCTTTCCAACTA 180
|||||| ||||||||||||||| ||||||||||||||||||| ||||||| ||||||||
Sbjct 136 CTTCTCACAGATTCAGAGAATGCTTCTGTTATGCGAACCCTCTTAAGCTCATTCCAACTC 195
Query 181 CATAACTGCGAGCCCACTCCTCAAGCTTACAGATTCGTTATCAAAACCCTAGCTAAAACC 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 196 CATAACTGTGAGCCCACTCCTCAAGCTTACAGATTCGTTATCAAAACCCTAGCTAAATCC 255
Query 241 TCTCAGCTTGAGAACATTGCATCTGTTCTTGACCACCTTGAAGTCTCTGAGAAGTTCGAC 300
|||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 256 TCTCAGCTTGAGAATATTTCATCTGTTCTTTACCACCTTGAAGTCTCTGAGAAGTTCGAT 315
Query 301 ACACCTGAATCCATTTTCAGGGATGTCATCGCTGCTTATGGCTTCTCCGGTAGAATTGAA 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 316 ACACCTGAATCCATTTTCAGAGATGTCATCGCTGCTTATGGCTTCTCCGGTAGAATCGAA 375
Query 361 GAGGCTATTGATGTTTTCTTCAAAATCCCTAATTTCAGGTGCGTGCCTTCTGCTTACACG 420
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GAGGCGATTGAGGTTTTCTTCAAAATCCCTAATTTCAGGTGCGTGCCTTCTGCTTACACG 435
Query 421 CTCAATGCTTTGCTCTTAGTTCTTGTGAGAAAAAGACAGAGTCTTGAATTGGTGCCTGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 436 CTCAATGCTTTGCTCTTAGTTCTTGTGAGAAAAAGACAGAGTCTTGAATTGGTTCCTGAG 495
Query 481 ATTTTAGTGAAAGCTAGTAGAATGGGTGTTAGGTTAGAGGAATCTACTTTCGGGATATTG 540
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 ATTTTGGTGAAAGCTTGTAGAATGGGTGTTAGGTTAGAGGAATCTACTTTCGGGATATTG 555
Query 541 ATCAATGCTCTTTGTAGAATCGGTGAGGTTGATTGTGCTACTGAGTTAGTGAGATACATG 600
||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 556 ATCGATGCGCTTTGTAGAATAGGTGAGGTAGATTGTGCTACTGAGTTAGTGAGATACATG 615
Query 601 AGTCAGGATAGTGTTATTGTTGATCCAAGATTATACTCTCTGTTGTTGAGTTCTGTTTGT 660
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 616 AGTCAGGATAGTGTTATTGTTGATCCAAGATTATACTCTCGGTTACTGAGTTCTGTATGT 675
Query 661 AAACACAAGGATTCGTCATGTTTTGATGTCATTGGATATTTGGAAGATCTGCGGAAGACT 720
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 676 AAACACAAGGATTCGTCATGTTTCGATGTAATTGGATATTTGGAAGATCTGCGAAAGACT 735
Query 721 CGGTTTTCGCCAGGTTTGCGGGATTATACAGTTGTGATGAGGTTCTTGGTGGAAGGAGGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 CGGTTTTCGCCAGGTTTGCGGGATTATACAGTTGTGATGAGGTTCTTGGTGGAAGGAGGA 795
Query 781 AGGGGAAAAGAAGTTGTAAGTGTACTGAATCAGATGAAATGTGACAGAGTAGATCCCGAT 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 796 AGGGGGAAAGAAGTTGTAAGTGTACTGAATCAGATGAAATGTGACAGAGTAGAGCCTGAT 855
Query 841 GTTGTTTGTTATACTATTGTGTTGCAAGGCGTTATTGCAGATGAGGATTACCCGAAAGCA 900
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 856 CTTGTTTGTTATACAATCGTGTTGCAAGGCGTTATTGCGGATGAGGATTACCCGAAAGCA 915
Query 901 GACAAGTTGTTTGATGAGTTACTCTTGTTAGGTTTGGATCCTGATGTTTATACCTATAAT 960
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 916 GACAAGTTGTTTGATGAGTTGCTCTTGTTAGGTTTGGCTCCTGATGTTTATACCTATAAT 975
Query 961 GTGTATATCAATGGGTTATGCAAGCAGAACGATATCGAAGGCGCTATTAA-GATGATGTC 1019
||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 976 GTGTATATCAATGGGTTATGCAAGCAGAACGATATTGAAGGCGCC-TTAAAGATGATGTC 1034
Query 1020 TTCAATGAACAAGCTAGGTTCTGAGCCTAATGTAGTTACATACAATGTAGTGATAAAAGG 1079
|||||||||||||||||||||||||||||||||||||||||||||| || |||| || ||
Sbjct 1035 TTCAATGAACAAGCTAGGTTCTGAGCCTAATGTAGTTACATACAATATATTGATCAA-GG 1093
Query 1080 -ATTGGTTAAAGCTGGAGATCTTAGTCGAGCTAAGACTCTATGGAAAGAGATGGAGATGA 1138
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1094 CATTGGTAAAAGCTGGAGATCTGAGTCGAGCTAAGACTCTATGGAAAGAGATGGAGACGA 1153
Query 1139 ATGGAGTTAACCGGAACAGCCACACATATGATATTATGATTAGTGCATATATTGAGGTAG 1198
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1154 ATGGAGTTAACCGGAACAGCCACACATTTGATATTATGATTAGTGCATATATTGAGGTAG 1213
Query 1199 ACGAGATTGTTTGTGCTCAAGGTTTATTGGAAGAAGCATTTAACATGAACTTGTTTGTTA 1258
||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 1214 ACGAGGTTGTTTGTGCTCATGGTTTATTGGAAGAAGCATTTAACATGAACGTGTTCGTTA 1273
Query 1259 AGAGTTCAAGAATTGAGGAAGTCATTAGCAGGTTATGTGAGAAAGGTTTGATGGATAAAG 1318
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1274 AGAGTTCGAGAATTGAGGAAGTCATTAGCAGATTATGTGAGAAAGGTTTGATGGATCAAG 1333
Query 1319 CAGTCGAACTTTTAGCACACCTGGTTTAAGCAATGTGGAGCAACTCTAAA-AGTTGTAAA 1377
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1334 CAGTCGAACTTTTAGCACACCTGGTTTAAGCAATGTGGAGCATCTCTAAATAGTTGTAAA 1393
Query 1378 ATTGATGTGTTTGGTCTTATTAATGATAGTTAGAAC 1413
|||||||| |||||||||||| ||||| ||||||||
Sbjct 1394 ATTGATGTATTTGGTCTTATTGATGATTGTTAGAAC 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5