BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482856

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38465.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   518    2e-146


> AT2G38465.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; 
EXPRESSED DURING: 11 growth stages; Has 16 Blast hits 
to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:16106263-16106913 REVERSE 
LENGTH=488
Length=488

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 356/391 (91%), Gaps = 11/391 (3%)
 Strand=Plus/Plus

Query  16   AAAGTGAGATATTTCGTAGCCTTACTTTTCAAGTTACACAAGTATTCTTTCTATCTCTAC  75
            ||||||||||||||| ||| ||| | |||||||||   ||||    |  ||||  |||| 
Sbjct  38   AAAGTGAGATATTTCCTAGTCTTGC-TTTCAAGTT--TCAAG----CAATCTA--TCTAT  88

Query  76   CTCGAAACAGCAACGATGCAAGAAGCCGAGACATCACAACGGCCGTCGAAGTCTTTGACG  135
            ||||||| |||| |||||||||| ||||||||||||| || |||| ||||||||||| | 
Sbjct  89   CTCGAAAAAGCAGCGATGCAAGACGCCGAGACATCACGACAGCCGGCGAAGTCTTTGTCC  148

Query  136  GATCGAGTGAAGACGAACTGTTTATCCATGGCAGTCTCGTGCCAGGAAGGTTTTAGCTAT  195
            |||||||||||||| ||||||||||||||||||||  | ||||||||||| |||||||||
Sbjct  149  GATCGAGTGAAGACTAACTGTTTATCCATGGCAGTAACATGCCAGGAAGGGTTTAGCTAT  208

Query  196  GTCAAAGCCTTTTTTGTTGGCCAGACAAAGAGATTGACGGCAAAGAACGAGAAGGAAGCT  255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  209  GTCAAAGCCTTTTTTGTTGGCCAGACAAAGAGATTGACGGCAAAGAACGAGAAGGAAGCT  268

Query  256  ACGGAGGCTCATCTAACGGAGACAAAAATGCAAGTTGACGCAACCGATGAAGCAGAGAAT  315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  269  ACGGAGGCTCATCTAACGGAGACAAAAATGCAAGTTGACGCAACCGATGAAGCAGAGAAT  328

Query  316  GCCAAGAAGAGACTTCGTCAATCTTCTTAGTGTTTCTTTATTAACATATAATAA-G-AGT  373
            |||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||
Sbjct  329  GCCAAGAAGAGACTTCATCAATCTTCTTAATGTTTCTTTATTAACATATAATAATGGAGT  388

Query  374  GTATACTTTATTAAGTAAACACAAATATCTG  404
            || |||||||||||| |||||||||||||||
Sbjct  389  GTGTACTTTATTAAGCAAACACAAATATCTG  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19101744620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5