BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482857
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38470.1 | Symbols: WRKY33, ATWRKY33 | WRKY DNA-binding prot... 2728 0.0
> AT2G38470.1 | Symbols: WRKY33, ATWRKY33 | WRKY DNA-binding protein
33 | chr2:16108361-16110766 FORWARD LENGTH=1902
Length=1902
Score = 2728 bits (1477), Expect = 0.0
Identities = 1761/1888 (93%), Gaps = 59/1888 (3%)
Strand=Plus/Plus
Query 1 CCATCACTTCTCTCGTTTTCTTCTTCTTCAAGCCCTCTTCTTCAAACACTTTCTATAAAT 60
|||||||||||||| |||||||||||| ||||||| | | | | ||||||||| ||
Sbjct 22 CCATCACTTCTCTCATTTTCTTCTTCTCCAAGCCC-C--C--C--TC-CTTTCTATATAT 73
Query 61 ATCTGAAATTGGTCTTTCATAAAACAAACTTCCATTTTTCGTATGGCTGCTTCTTCTTTT 120
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 74 ATCTGAAATTGGTCTTTTATAAAACAAACTTCCATTTTTCGTATGGCTG---CTTCTTTT 130
Query 121 CTTACAATGGACAATAGCAGAACCAGACAAAACATGAATGGTTCTGCTAATAATTGGTCA 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 131 CTTACAATGGACAATAGCAGAACCAGACAAAACATGAATGGTTCTGC---TAATTGGTCA 187
Query 181 CAACAATCCGGAAGAACATCAACTTCATCTTTGGAAGATCTTGAGATCCCAAAGTTCAGA 240
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 188 CAACAATCCGGAAGAACATCTACTTCCTCTTTGGAAGATCTTGAGATACCAAAGTTCAGA 247
Query 241 TCTTTTGCT-C--CTTC-ATC-C-A--------TCTC-TATCTCTCCTTCCACTTGTTTC 285
||||||||| | |||| ||| | | |||| | ||||||||||||||||||||
Sbjct 248 TCTTTTGCTCCTTCTTCAATCTCTATCTCTCCTTCTCTTGTCTCTCCTTCCACTTGTTTC 307
Query 286 AGTCCCTCTGTTTTCCTCGATTCCCCTGCTTTTGTCTCCCCCTCTGCTAACGTTCTTGCT 345
||||||||| |||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 308 AGTCCCTCTCTTTTTCTCGATTCCCCTGCTTTTGTCTCCTCCTCTGCTAACGTTCTAGCT 367
Query 346 TCTCCAACCACAGGAGCTTTAATCACAAACGGAAGTAACCAGAAAGGTATAAATGAAGGA 405
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 368 TCTCCAACCACAGGAGCTTTAATCACAAACGTAACTAACCAGAAAGGTATAAATGAAGGA 427
Query 406 GAGAAGAGCAACAACAACAACATTAACTTCTTCGATTTCTCATTCCACACACAATCATCA 465
|| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 428 GACAAGAGCAACAACAACAACTTTAACTTATTCGATTTCTCATTCCACACACAATCATCA 487
Query 466 GGAGTTTCTGCTCc-a--ac--c-acaactac-a--acaacaacgacaacaacaaacaGT 516
|||||||||||||| | || | |||||||| | ||||| || |||||||||||||||
Sbjct 488 GGAGTTTCTGCTCCGACCACAACTACAACTACAACTACAACTACAACAACAACAAACAGT 547
Query 517 TCTATCTTTCAACCTCAGGAACAACAGAAGAAGAACCAGTCAGAGCAATGGAACCAAACC 576
|||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 548 TCTATCTTTCAATCTCAGGAACAACAGAAGAAGAACCAGTCAGAACAATGGAGCCAAACC 607
Query 577 GAGACTCGTCCAAACAATCAAGCTGTATCTTACAATGGAAGAGAGCAAAGGAAAGGAGAG 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GAGACTCGTCCAAACAATCAAGCTGTATCTTACAATGGAAGAGAGCAAAGGAAAGGAGAG 667
Query 637 GATGGTTACAATTGGAGAAAGTACGGACAGAAACAGGTGAAAGGAAGTGAGAATCCTCGG 696
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 668 GATGGTTACAATTGGAGAAAGTACGGACAAAAACAGGTGAAAGGAAGTGAGAATCCTCGG 727
Query 697 AGTTACTATAAGTGTACTTTCCCAAATTGTCCAACGAAGAAGAAAGTGGAGAGATCTTTG 756
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 728 AGTTACTATAAGTGTACTTTCCCTAATTGTCCAACGAAGAAGAAAGTGGAGAGATCTTTG 787
Query 757 GAAGGTCAGATCACAGAGATTGTGTATAAAGGAAGCCATAACCATCCTAAACCTCAGTCT 816
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 788 GAAGGTCAGATCACAGAGATTGTGTATAAAGGAAGCCACAACCATCCTAAACCTCAGTCT 847
Query 817 ACTAGAAGATCTTCTTCGTCTTCTTCAACTTTTCATTCAGCTGTGTACAATGCCAGTTTG 876
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 848 ACTAGAAGATCTTCTTCGTCTTCTTCGACTTTTCATTCAGCTGTGTACAATGCCAGTTTG 907
Query 877 GATCATAACCGTCAAGCTTCTTCTGATCAACCTAATTCCAATAATAGCTTTCATCAGTCT 936
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 908 GATCATAATCGTCAAGCTTCTTCTGATCAGCCTAATTCCAATAATAGCTTTCATCAGTCT 967
Query 937 GATTCCTTTGGGATGCAACAAGAGGATAATACTACTTCTGATTCTGTTGGTGACGATGAG 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GATTCCTTTGGGATGCAACAAGAGGATAATACTACTTCTGATTCTGTTGGTGACGATGAG 1027
Query 997 TTTGAACAAGGCTCCTCGGTTGTCAGCAGAGAAGAAGAAGATTGTGGGAGTGAACCTGAA 1056
|| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1028 TTCGAACAAGGCTCATCGATTGTCAGCAGAGACGAAGAAGATTGTGGGAGTGAACCTGAA 1087
Query 1057 GCAAAGAGATGGAAAGGAGATAATGAAACAAATGGTGGGAATGGTGGCGGAAGCAAGACA 1116
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1088 GCAAAGAGATGGAAAGGGGACAATGAAACAAATGGTGGGAATGGTGGTGGAAGCAAGACA 1147
Query 1117 GTGAGAGAGCCAAGAATTGTCGTGCAGACAACGAGTGATATCGACATTCTTGACGACGGT 1176
||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1148 GTGAGAGAGCCGAGAATCGTAGTGCAGACAACGAGTGATATTGACATTCTTGACGACGGT 1207
Query 1177 TACAGATGGAGAAAATACGGCCAGAAAGTCGTTAAGGGAAACCCAAATCCAAGAAGCTAC 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TACAGATGGAGAAAATACGGCCAGAAAGTCGTTAAGGGAAACCCAAATCCAAGAAGCTAC 1267
Query 1237 TACAAGTGCACAACCATCGGTTGTCCAGTGAGGAAACATGTTGAGAGAGCATCACACGAT 1296
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1268 TACAAGTGCACAACCATCGGTTGTCCAGTGAGGAAACATGTGGAGAGAGCATCACACGAC 1327
Query 1297 ATGAGAGCGGTAATCACAACCTACGAAGGGAAACACAACCACGATGTTCCTGCAGCTCGT 1356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 ATGAGAGCAGTAATCACAACCTACGAAGGGAAACACAACCACGATGTTCCTGCAGCTCGT 1387
Query 1357 GGTAGCGGTTATGCCACAAACAGAGCCCCACAGGATTCTTCTTCAGTCCCAATTAGACCA 1416
||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 1388 GGTAGCGGTTACGCCACAAACAGAGCACCACAGGATTCGTCTTCAGTCCCGATTAGACCA 1447
Query 1417 GCTGCTATTGCTGGTCACTCCAACTACACTGCTTCTTCTCAAGCACCATATACGCTCCAG 1476
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1448 GCTGCTATTGCTGGTCACTCCAACTACACTACTTCTTCTCAAGCACCATATACACTTCAG 1507
Query 1477 ATGCTGCACAACAACAACACTAATTCCGGGGCTTTTGGTTACGCTATGaacaacaataac 1536
|||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 1508 ATGCTGCACAACAACAACACTAATACCGGGCCTTTTGGTTACGCCATGAACAACAATAAC 1567
Query 1537 aacaacagcaaccttcaaacgcaacaaaacTTTGTTGGTGGTGGGTTTTCTAGAGCAAAG 1596
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1568 AACAACAGCAACCTTCAAACGCAACAAAACTTTGTTGGTGGTGGATTCTCTAGAGCAAAG 1627
Query 1597 GAAGAACCAAACGAGGAGACCTCGTTTTTCGATTCGTTTTTGCCCTGAAGAAAAAAGGAA 1656
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1628 GAAGAACCAAACGAGGAGACCTCATTTTTCGATTCGTTTATGCCCTGAAGAAAAAAGGAA 1687
Query 1657 TC--T-GTT----------GTTCCTTTTGTACATTTCTGCCACCAAAGGATTTTACTACT 1703
| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 CCAGTTGTTCCTTTTTTATGTTCCTTTTGTACATTTCTGCCACCAAAGGATTTTACTACT 1747
Query 1704 TACTAGTGATCCTGCAGGATAGTA-GTAAGACT---ATAGTCCATAGAGAA-ttttttca 1758
||||||| |||||||||||||||| || ||||| ||||||||||||||| ||||||||
Sbjct 1748 TACTAGTTATCCTGCAGGATAGTAAGTCAGACTTCTATAGTCCATAGAGAAATTTTTTCA 1807
Query 1759 tttgttttttCACACGCCTGTAATATGTTTAATGTTTGTACCATAGAAC--TAGaaaaaa 1816
||||||||||||||||||||||||||||||||||||||||| | | || ||||| |
Sbjct 1808 TTTGTTTTTTCACACGCCTGTAATATGTTTAATGTTTGTACTTT-GTACCATAGAACTAG 1866
Query 1817 aaaaCTGAATAAAACCAATCAATTTTCA 1844
|| || ||||||||||||||||||||||
Sbjct 1867 AACACGGAATAAAACCAATCAATTTTCA 1894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264590810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5