BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482859
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38490.1 | Symbols: CIPK22, SnRK3.19 | CBL-interacting prote... 2466 0.0
AT5G01820.1 | Symbols: ATSR1, SnRK3.15, CIPK14, ATCIPK14, SR1 |... 250 3e-65
> AT2G38490.1 | Symbols: CIPK22, SnRK3.19 | CBL-interacting protein
kinase 22 | chr2:16113491-16115285 REVERSE LENGTH=1795
Length=1795
Score = 2466 bits (1335), Expect = 0.0
Identities = 1563/1672 (93%), Gaps = 20/1672 (1%)
Strand=Plus/Plus
Query 30 CTGTTTCTATTTGCTCTG--tttttt-tttGTTGGTTAATGGCCGAAGACTCTAATTCTT 86
|||||| | ||||||||| |||||| |||||| ||||||||||||||||||||||||||
Sbjct 46 CTGTTT-T-TTTGCTCTGTTTTTTTTGTTTGTTTGTTAATGGCCGAAGACTCTAATTCTT 103
Query 87 CCGATTCAATCATCGTTAATGTCATCGGAGATGATAATAAGTCGGCGTTGTTCGGTAAGT 146
|||| |||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct 104 CCGAATCAATCATTGTTAACGTCACCGGAGATGATAATAAGTCGGCTTTGTTCGGTAAGT 163
Query 147 ACGACCTCGGAAAGCTCCTCGGTAGCGGCGCGTTTGCCAAAGTCTACCAAGCGGAGGATC 206
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 ACGATCTCGGTAAGCTCCTCGGTAGCGGCGCGTTTGCCAAAGTCTACCAAGCGGAGGATC 223
Query 207 TCCAAAACGGTGGAGAAAGCGTTGCGATCAAAGTCGTACaaaaaaaaCGTTTGAAAGACG 266
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TTCAAAACGGCGGCGAAAGCGTTGCGATCAAAGTCGTACAAAAAAAACGTTTGAAAGACG 283
Query 267 GTTTAACGGCGCACGTTAAGAGAGAGATCTCTGTCATGCGCCGTCTTCGTCATCCTCATA 326
||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||
Sbjct 284 GTTTAACGGCGCACGTTAAGAGAGAAATATCTGTCATGCGCCGCCTCCGTCATCCTCATA 343
Query 327 TCGTGCTCCTCTCCGAAGTCCTCGCCACCAAGACGAAGATCTATTTCGTCATGGAGCTAG 386
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 344 TCGTGCTCCTCTCCGAAGTCCTCGCCACAAAGACGAAGATCTACTTCGTCATGGAGCTAG 403
Query 387 CCAAAGGCGGCGAGCTTTTCTCCAGAGTCACTAGCAACCGTTTCACGGAGAGTCTCAGCC 446
||||||| || ||||| ||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 404 CCAAAGGTGGTGAGCTCTTCTCAAGAGTCACCAGCAACCGTTTCACAGAGAGTCTTAGCC 463
Query 447 GGAAATATTTCCGGCAGTTGATCTCCGCCGTGAGATACTGCCACGCAAGAGGAGTTTTTC 506
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 464 GGAAATATTTCCGGCAATTGATCTCCGCCGTGAGATACTGCCACGCAAGAGGAGTTTTCC 523
Query 507 ACCGTGATTTGAAACCGGAGAATCTCCTCCTCGACGAGAATCGAGATCTGAAGGTTTCAG 566
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 ACCGTGATTTGAAGCCGGAGAATCTCCTCCTCGACGAGAATCGAGATCTGAAGGTTTCAG 583
Query 567 ACTTCGGTCTCAGTGCGATGAAGGAACAGATTCGTCCCGACGGGATGCTACACACGCTTT 626
||||||||||||||||||||||||| ||||| | |||||||| |||||||| ||||| |
Sbjct 584 ACTTCGGTCTCAGTGCGATGAAGGAGCAGATCCACCCCGACGGAATGCTACATACGCTCT 643
Query 627 GTGGAACTCCGGCTTACGTTGCACCGGAGCTTCTTTTGAAGAAAGGCTACGACGGTTCTA 686
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GTGGAACTCCGGCTTACGTAGCACCGGAGCTTCTTTTGAAGAAAGGCTACGACGGTTCTA 703
Query 687 AAGCTGATATTTGGTCATGCGGCGTCGTTTTGTTCCTTCTCAACGCCGGTTACTTGCCGT 746
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 704 AAGCTGATATTTGGTCATGCGGCGTCGTTTTGTTTCTTCTCAACGCAGGCTACTTGCCGT 763
Query 747 TTCGTGATCCAAACATCATGGGACTATACCGGAAAATCCACAAGGCTCAATACAAGTTAC 806
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 764 TTCGTGATCCAAACATCATGGGACTCTACCGGAAAATCCACAAGGCTCAATACAAGTTAC 823
Query 807 CGGATTGGACATCTTCAGATCTACGGAAACTCCTCCGCCGTCTCTTGGAGCCTAACCCGG 866
|||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 824 CGGATTGGACATCTTCAGATCTGCGGAAACTCCTCCGCCGTCTCTTGGAGCCAAATCCGG 883
Query 867 AACTGCGGATCACCGTCGAGGAGATTCTAAAGGATCCGTGGTTCAATCATGGAGTAGATC 926
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 AACTGCGAATCACCGTGGAGGAGATTCTAAAGGATCCGTGGTTCAATCATGGAGTAGATC 943
Query 927 CAAGCGAAACCATCGGAATCCAAGCCGACGATTACGATCTAGAGGAAAACGGGAAGATTT 986
||||||||| |||||||||||||||||| ||||||||||| || |||||||| || |||
Sbjct 944 CAAGCGAAATCATCGGAATCCAAGCCGATGATTACGATCTGGAAGAAAACGGTAAAATTC 1003
Query 987 TAAACGCCTTCGATTTGATTTCGTCGGCGTCGAGCTCGAATCTCTCCGGTTTGTTTGGAA 1046
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1004 TAAACGCGTTCGATTTGATTTCTTCGGCGTCGAGCTCGAATCTCTCCGGTTTGTTTGGAA 1063
Query 1047 ATTTCGTGACGCCGGATCATTGCGACCAGTTCGTCTCCGATGAGAGTACGGCGGAGATTA 1106
||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||
Sbjct 1064 ATTTCGTGACGCCGGATCATTGCGACCAGTTTGTATCCGATGAGAGTACGGCCGTTATTA 1123
Query 1107 TGAGGAAGGTCGAGGAAGTTGTGAAGCAGTTGAATCTGCGAATCGCGAAGAAGAAGGAGA 1166
||||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||
Sbjct 1124 TGAGGAAGGTCGAGGAAGTTGCGAAGCAGTTAAATTTGAGAATCGCGAAGAAGAAGGAGA 1183
Query 1167 GAGCGATCAAGCTTGAAGGTCCACATGGAGTAGCTAATGTCGTCGTTAAAGTTCGTCGGC 1226
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1184 GAGCGATAAAGCTTGAAGGTCCACATGGAGTAGCTAATGTCGTCGTTAAAGTTCGCCGGC 1243
Query 1227 TAACAAAAGAACTAGTGATGGTGGAGATGAAGAACAAGCAGAGAGACGTGGGCTTGGTTT 1286
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1244 TAACAAATGAACTAGTGATGGTGGAGATGAAGAACAAGCAAAGAGACGTGGGCTTGGTTT 1303
Query 1287 GGGCCGATGCTCTTAGGCAAAAACTACGTCGTTTGATTAACCAACCGGTTTTTAGGGTTC 1346
|||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||
Sbjct 1304 GGGCCGATGCTCTTAGACAAAAGTTACGTCGTTTGATTAACCAACCGGTTTATAAAGTTC 1363
Query 1347 CTGACAAACCGTAAAATGGTTTCCACACAAAACCAACAATCCGTGCGTTTTACTCG--GA 1404
|||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||
Sbjct 1364 CTGACAAACCGTAAAACGGTTTCAACACTAAACCAACAATCCGTGCGTTTTACTTTTAGA 1423
Query 1405 ATTTTTCAACGTAATCCATTCGCGATCGAGACGCATT-TGGTTAACCGGTTCGGTTTACA 1463
||||| ||||||| | || ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1424 ATTTT-CAACGTACTACACTCGGGATCGAGACGCATTGTGGTTAACCGGTTCGGTTTACA 1482
Query 1464 TGGGAGCAGAGAGAGTAATGGGACGATCCGCCTCTTTGTATATAAAAATGACAAGAAGaa 1523
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TTGGAGCAGGGAGAGTAATGGGACGATCCGCCTCTTTGTATATAAAAATGACAAGAAGAA 1542
Query 1524 a-aaaaa--CAAACCGGGATTCAAtt-tttttgtttattt-ttttCGGAGTATAATTTAA 1578
| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1543 AGAAAAAAACAAACCGGGATTCAATTATTTTTGTTTATTTATTTTCGGAGTATAATTTAA 1602
Query 1579 ACACAAAA-TTATTTGCTTTATTCATCGCAGAGAAATTGAATAAAACTCTGATCTGAACT 1637
|||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||
Sbjct 1603 ACACAAAAATTATTTGCTTTATTCATCGGAGAGAATTTGAATAAAACTCTGATTTGAACT 1662
Query 1638 TTGTAGTTTTTAtgtgtatgtgtgactgtgtgtgtTTGCAAACTTGGGCCTT 1689
|||||| ||| | ||||||||| |||||||||||||||||||||||||
Sbjct 1663 TTGTAGCCTTT-T----ATGTGTGACCGTGTGTGTTTGCAAACTTGGGCCTT 1709
> AT5G01820.1 | Symbols: ATSR1, SnRK3.15, CIPK14, ATCIPK14, SR1
| serine/threonine protein kinase 1 | chr5:313193-315000 REVERSE
LENGTH=1808
Length=1808
Score = 250 bits (135), Expect = 3e-65
Identities = 398/522 (76%), Gaps = 30/522 (6%)
Strand=Plus/Plus
Query 285 AGAGAGAGATCTCTGTCATGCGCCGTCTTCGTCATCC-TCATATCGTGCTCCTCTCCGAA 343
||||||||||| || |||||| |||||| || || || || |||||||| ||| | |||
Sbjct 452 AGAGAGAGATCGCTATCATGCACCGTCTGCGCCACCCTTC-TATCGTGCGCCTGTTCGAG 510
Query 344 GTCCTCGCCACCAAGA-CGAAGATCTAT-TTCGTCATGGAGCTAGCCAAAGGCGGCGAGC 401
|||||||||||||| | | ||||||| | ||||||||||| | ||||| ||||| ||||
Sbjct 511 GTCCTCGCCACCAA-ATCCAAGATCT-TCTTCGTCATGGAATTCGCCAAGGGCGGTGAGC 568
Query 402 TTTTCTCCAGAGTC-ACTAGCAACCGTTTCACG-GA-GAGTCTCAGCCGGAAATATTTCC 458
| ||| ||| |||| | || | | ||| | || || ||| ||||| |||||||
Sbjct 569 TATTCGCCAAAGTCTCCAAG-GGCAGGTTC-TGCGAGGA-TCTTAGCCGTCGTTATTTCC 625
Query 459 GGCAGTTGATCTCCGCCGT-GAGATACTGCCACGCAAGAGG-AGTTTTTCACCGTGATTT 516
|||| | ||||||||||| | |||| |||||| | | || | | |||||||||||| |
Sbjct 626 AGCAGCTCATCTCCGCCGTCG-GATATTGCCACTCCCGCGGCA-TCTTTCACCGTGATCT 683
Query 517 GAAACCGGAGAATCTCCTCCTCGACGAGAATCGAGATCTGAAGGTTTCAGACTTCGGTCT 576
||||||||||||||||||||||||||||| | ||| ||||| | || || ||||| ||
Sbjct 684 CAAACCGGAGAATCTCCTCCTCGACGAGAAGCTCGATTTGAAGATCTCTGATTTCGGACT 743
Query 577 CAGTGCGATGAAGGAACAGATTCGTCCCGACGGGATGCTACACACGCTTTGTGGAACTCC 636
||| || | | || ||||| || |||||||| | || ||||| || ||||| || ||
Sbjct 744 CAGCGCTCTTACCGATCAGATCCGACCCGACGGCCTCCTCCACACACTCTGTGGTACGCC 803
Query 637 GGCTTACGTTGCACCGGAGCTTCTTTT-GAAGAAAGGCTACGACGGTTCTAAAG-CTGAT 694
||| ||||| || || ||| || || ||||||||| ||||||||| ||||| | ||
Sbjct 804 GGCGTACGTGGCGCCTGAGGTT-TTGGCGAAGAAAGGGTACGACGGTGCTAAAATC-GAC 861
Query 695 ATTTGGTCATGCGGCGTCGTTTTGTTCCTTCTCAACGCCGGTTA-CTTGCCGTTTCGT-G 752
|| |||||||| || || | ||||| | |||||||||||||| || || |||| |
Sbjct 862 ATATGGTCATGTGGAATCATACTGTTCGTCCTCAACGCCGGTTATCTC-CC-TTTCAACG 919
Query 753 ATCCA-AA-CATCATGGG-ACTATACCGGAAAATCCACAAGG 791
| ||| || | |||||| | | |||||||||||| ||||||
Sbjct 920 A-CCATAATC-TCATGGTTA-TGTACCGGAAAATCTACAAGG 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5