BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482864
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38550.1 | Symbols: | Transmembrane proteins 14C | chr2:161... 1794 0.0
> AT2G38550.1 | Symbols: | Transmembrane proteins 14C | chr2:16132006-16134415
FORWARD LENGTH=1366
Length=1366
Score = 1794 bits (971), Expect = 0.0
Identities = 1201/1305 (92%), Gaps = 44/1305 (3%)
Strand=Plus/Plus
Query 1 GAATCCCTAAGCTCAAAGTATCTCTCATTCTCTAATCTCTTCTTCGCCGACGACTTCTCT 60
||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 87 GAATCCCTAAGCTTAAAGTCTCTATTATTCTCTAATCTCTTCTTCGCCGACGACTTCTCT 146
Query 61 CACCAAGGCGACGTTTTGATCAGGC---GATGAGTATCCCAATGGAGTTGATGTCCATCA 117
||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 147 CACCAAGGCGACGTTTTGATCAGGCGATGATGAGTATCCCAATGGAGTTAATGTCTATCA 206
Query 118 GAAACCCTAATTCGACTTTGCTCTACAGAGCTCATTCTCGTCCGCCGGTG-A---C---G 170
||||||||||||| || |||||||| |||||||| ||||||||||| ||| | | |
Sbjct 207 GAAACCCTAATTCCACCTTGCTCTATAGAGCTCACTCTCGTCCGCCTGTGAAGCTCTGTG 266
Query 171 --CCACCACGTACTCTCCTCCCTAGCCGACGCCATTTTAGTGCTCCTCGAGCTGTTGTTT 228
||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 267 CTCCACCTCGTTCTCTCCTCCCTAGCCGACGCCATTTCAGTGCTCCTCGAGCTGTTGTTT 326
Query 229 CGTGTACAGGGCTACGTTTCGGCTTTAGCTCGCCTTATTGTCCAGAAGTCTTGCTTAATC 288
||| | |||| ||||||||||||||| |||||| | ||||||||||||||||
Sbjct 327 CGTATCCAGGAATACGTTTCGGCTTTACCTCGCC-----G----GAAGTCTTGCTTAATC 377
Query 289 GATCCGTCGTTGCTTTCGCTGCATCTCACGAGGATTTGGAAGAATCAGGTGTTGAGGTGG 348
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 378 GATCCGTCGTTGCTTTCGCTGCATCCCACGAGGATTCGGGAGAATCAGGTGTTGAGGTGG 437
Query 349 GAAAGGAGAAGAGTGATATAGATGTTGAAGATGATACATCTAAGGAAGCATGGAAACAAA 408
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GGAAGGAGAAGAGTGATATAGATGTTGAAGATGATACATCTAAGGAAGCATGGAAACAAA 497
Query 409 CTCTTGAGTCTTTTAAAGAGCAGGTATCAAAGATGCAGAGCGTGTCATCGGAGGCATACT 468
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 498 CTCTTGAGTCTTTTAAAGAGCAGGTATCAAAGATGCAGAGTGTGTCATCGGAGGCATACT 557
Query 469 CCGTTAACTCCCAAAAGGCGATGACGGTCTTGAAAGAAACTTCTGAACAACTTAGGATTC 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CCGTTAACTCCCAAAAGGCGATGACGGTCTTGAAAGAAACTTCTGAACAACTTAGGATTC 617
Query 529 AAGCGGAAAAGGCGAAAGAAGAGTTGGGTACTAAAGCTAAAGTGGTTGGTGAAGAGGGTA 588
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 618 AAGCGGAAAAGGCGAAAGAAGAGTTGGGTACTAAAGCGAAAGTGGTTAGTGAAGAGGGTA 677
Query 589 GAGAATATATTTTGAAAGCAGCAGAAGAATCACCATCAGATGTGAAAGAGATCGTTGAAG 648
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 678 GAGAATATATTTTGAAAGCAGCAGAAGAATCTCCATCAGATGTGAAAGAGATTGTTGAAG 737
Query 649 CATTCGCCGCCAGTGAGGATCTGAAAGATGTGTCCCGAGCGAATGATTTTCATGTTGGAA 708
|||| ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 738 CATTTGCCTCCACTGAGGATCTGAAAAATGTGTCCCGAGCGAATGATTTTCATGTTGGAA 797
Query 709 TACCCTATGGTCTACTCCTGCTTGTCGGTGGTTTTATCAACTTTATGGTATCGGGAAGCA 768
|||| |||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 798 TACCTTATGGTCTACTCTTGCTTGTGGGTGGTTTTATTAACTTCATGGTATCGGGAAGCA 857
Query 769 TTCCAGCCATCAGGTTTGGAGTCATTCTTGGTGGAGCTCTTTTTGCACTGAGCCTGGCAA 828
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 858 TTCCGGCCATCAGGTTTGGAGTCATTCTTGGTGGAGCCCTTTTTGCACTGAGCCTGGCAA 917
Query 829 GTCTAAAGTCTCATAGGAAAGGAGAGTCATCTACTAAGTTCTTAAAAGGACAGATGGCTA 888
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 918 GTCTAAAGTCTCATAGGAAAGGAGAGTCATCTACAAAGTTCTTAAAAGGACAGATGGCTA 977
Query 889 TAGTGGCAATCATATTTTTGAGAGAGTTGCGGTTGCTACTGTCTCAGAAATCGACGTTCC 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TAGTGGCAATCATATTTTTGAGAGAGTTGCGGTTGCTACTGTCTCAGAAATCGACGTTCC 1037
Query 949 TAGGtttttttACCACCCTTACGAGTGGTGGTGTGTT-GGCGTTTTACTTGTACAAGATG 1007
|||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||
Sbjct 1038 TAGGTTTTTTTACCACCCTTACAAGTGGTGGTGTGCTAGG-GTTTTACTTGTACAAGATG 1096
Query 1008 GTGGGCAAGAGAGGAAAGGGACAAAACTTAGAAGATGGAGGAGAAGATGAATCAGGCGAT 1067
|||| |||||||| |||||||| || |||||||||||| ||||||||||||||| |||||
Sbjct 1097 GTGGTCAAGAGAGAAAAGGGACCAACCTTAGAAGATGGCGGAGAAGATGAATCAAGCGAT 1156
Query 1068 GGGGTTGTAAGAAGTGAAGGATAGAGAAAAATGG--TAAGAGAAAGATGTGTTGTTGTCA 1125
||| ||||||||||||||||||| |||||||||| |||||| |||| ||||||| ||||
Sbjct 1157 GGGTTTGTAAGAAGTGAAGGATAAAGAAAAATGGGGTAAGAGGAAGAAGTGTTGTCGTCA 1216
Query 1126 ACATCAGCAGCATCATATATCCAAACTCTTTTGATGTCTCTTTT-A-GTTGTGTACAATT 1183
||||||||| ||| |||| ||||||||||||||| |||||||| | |||||||||||||
Sbjct 1217 ACATCAGCATCAT-ATATG-CCAAACTCTTTTGATATCTCTTTTTAAGTTGTGTACAATT 1274
Query 1184 TTTGAGATCAATCAGCTTCTAATTTCCGTTGTATTTTGATTAGTGATTAGTGAGTCATTT 1243
|||| |||||||| ||||||||||||||||||||| | | ||||||||||| |||
Sbjct 1275 TTTGCGATCAATC--CTTCTAATTTCCGTTGTATTT-G----G--ATTAGTGAGTCGTTT 1325
Query 1244 TACGATAATATCAACAAA--AAGTAAAAGCGAGAATTTTATTTTG 1286
| ||||||||||||| || ||||| ||||||||||||||||
Sbjct 1326 -AT--TAATATCAACAAACCAA-TAAAAACGAGAATTTTATTTTG 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5