BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482865
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS... 2405 0.0
> AT2G38560.1 | Symbols: TFIIS | transcript elongation factor IIS
| chr2:16134638-16136695 FORWARD LENGTH=1677
Length=1677
Score = 2405 bits (1302), Expect = 0.0
Identities = 1481/1567 (95%), Gaps = 13/1567 (1%)
Strand=Plus/Plus
Query 1 CTATCTTGTTCGTCGCGACTCAAACGAGGTTCCGCCGATTATTATCCTTTTTCTCCATTC 60
||||||| ||||||| |||||||||||||||||||||||||| |||| || ||||||| |
Sbjct 13 CTATCTTCTTCGTCGTGACTCAAACGAGGTTCCGCCGATTATAATCC-TTCTCTCCATAC 71
Query 61 TTGAGAGATTTTGTTGGATTGTT-TTTGTTCTGAGTCGTCTTGGATCTGTCGGTGTTGGC 119
||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 72 TTGAGAGATTTTGTTGGATTGTTCTTTGTTCTGAGTCGCCTTGGATCTATCGGTGTTGGT 131
Query 120 GCTTTGTTCTTGGAGCTAGGGATTTG-AGGGACGATGGAAAGTGATTTGATTGAATTGTT 178
|||||||| || |||||||||| ||| || |||||||| |||||||||||||| |||||
Sbjct 132 GCTTTGTTTTTTGAGCTAGGGA-TTGTCGGAACGATGGAGAGTGATTTGATTGATTTGTT 190
Query 179 CGAGGGAGCTAAGAAGGCAGCCGATGCGGCGGCTCTCGACGGTGTTGCCTCTTCAGGTCC 238
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 191 CGAGGGAGCTAAGAAGGCAGCCGATGCGGCGGCTCTTGACGGTGTTACCTCTTCAGGTCC 250
Query 239 GGAGGTTTCTCAATGTCTCGATGCCCTTAAACAACTCAAGAAGTTTCCTGTCACATACGA 298
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 251 TGAGGTTTCTCAATGTATCGATGCCCTTAAACAGCTCAAGAAGTTTCCTGTCACATACGA 310
Query 299 TACGCTTGTTGCGACTCAGGTGGGAAAAAAGCTGAGGTCTCTTGCAAAACACCCTATTGA 358
||| || |||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 311 TACCCTCGTTGCGACTCAGGTGGGAAAGAAGCTGAGGTCTCTTGCAAAACATCCTGTTGA 370
Query 359 GGAGATCAAAAGCGTAGCTACTGATTTGCTTGAGATATGGAAGAAAGTTGTCATTGAAGA 418
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 371 AGATATCAAAAGCGTAGCTACTGATCTGCTTGAGATATGGAAGAAAGTTGTCATTGAAGA 430
Query 419 GACAGCCAAGGCTAAGAAAACTGAAGGCACTAACGGTTGTAAAGAGGCTAAGGTGAATAA 478
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 431 GACAGCCAAAGCTAAGAAAACCGAAGGCACTAACGGTTGTAAAGAGGCTAAGGTGAATAA 490
Query 479 GATGGATGTTGATAAGCCTTCAAATCCCGCGCCTGTTAAAGTCCAGAAACTTCAGAGGGG 538
|||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 491 GATGGATGTTGAGAAGCCTTCAAATCCTGCTCCTGTTAAAGTTCAGAAACTTCAGAGGGG 550
Query 539 TGATTCGGCTAAGAGTATCAAGGTTGAGAGAAAGGAACCAGACAATAAAGGCGTTACCGG 598
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 551 TGATTCGGCTAAGAGTATCAAGGTTGAGAGAAAGGAACCTGACAATAAAGTTGTTACCGG 610
Query 599 TGTCAAGATAGAGAGAAAGGAACCAGACAACAAAGTCACTAATGGAACCAAGATAGATTA 658
|||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||
Sbjct 611 TGTCAAGATAGAGAGAAAGGTACCTGACATCAAAGTCACCAATGGAACCAAGATAGATTA 670
Query 659 TCGTGGTCAGGCTGTTAAGGATGAAAAGGTCTCAAAGGACAACCAATCAAGTATGAAAGC 718
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TCGTGGTCAGGCTGTGAAAGATGAAAAGGTCTCAAAGGACAACCAATCAAGTATGAAAGC 730
Query 719 TCCAGCTAAGGCACCTAATGCTCCTCCAAAACTAACTGCAATGCTCAAATGCAATGATCC 778
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TCCAGCTAAAGCAGCTAATGCTCCTCCAAAACTAACTGCAATGCTCAAATGCAATGATCC 790
Query 779 TGTGCGTGACAAAATCCGTGAGTTGCTTGTAGATGCGTTGTGCAGGGTTGCTGGAGAAGC 838
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 791 TGTGCGTGACAAAATCCGTGAGTTGCTTGTGGAGGCGTTGTGCAGGGTTGCTGGAGAAGC 850
Query 839 TGATGACTATGAGAGAAAGTCAGTAAATGCTAGTGATCCACTCCGTGTTGCTGTCTCAGT 898
|||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 851 TGATGACTATGAGAGAGAGTCAGTAAATGCTAGTGATCCTTTACGTGTTGCTGTCTCAGT 910
Query 899 GGAATCACTGATGTTTGAGAAATTGGGTCGCTCAACTGGAGCTCAGAAGCTTAAGTACAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GGAATCACTGATGTTTGAGAAATTGGGTCGCTCAACTGGAGCTCAGAAGCTTAAGTACAG 970
Query 959 ATCTATAATGTTCAACCTGAGGGACGGTAACAACCCGGACTTAAGAAGGAGGGTTCTCAC 1018
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 971 ATCTATAATGTTCAACCTGAGGGATAGTAACAACCCGGACTTAAGAAGGAGGGTTCTCAC 1030
Query 1019 CGGGGAGATTTCACCAGAGAAACTCATCACATTGTCTGCTGAAGAAATGGCAAGCGACAA 1078
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 1031 TGGGGAGATTTCACCAGAGAAACTCATAACATTGTCTGCCGAAGATATGGCAAGTGACAA 1090
Query 1079 GAGGAAACAAGAGAACAATCAGATAAAAGAGAAAGCCCTGTTTGATTGCGAGCGTGGTCT 1138
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1091 GAGGAAACAAGAGAACAACCAGATCAAAGAGAAAGCCCTGTTTGATTGTGAGCGTGGTCT 1150
Query 1139 TGCAGCAAAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAACGCAAATGCAC 1198
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1151 TGCTGCAAAAGCATCTACCGACCAGTTCAAGTGCGGGCGGTGTGGTCAGCGCAAATGCAC 1210
Query 1199 CTACTATCAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACCTATGTTACATGTGT 1258
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1211 CTACTATCAGATGCAAACAAGAAGTGCTGATGAGCCAATGACGACTTATGTTACATGTGT 1270
Query 1259 TAACTGTGACAACCACTGGAAGTTCTGTTAAGGAGATCTCTGTGTGTCTTTGTATTTCAT 1318
||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 1271 TAACTGTGACAACCACTGGAAGTTCTGTTGAGGAGATCTCTGTGT--CTTT-TATTTCAT 1327
Query 1319 GAGACCATGTTAAGACATAGAGGCTCTGATTGATTAATCAGGAGCTTCATGTCCATTTGC 1378
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1328 GAGACCATGTTAAGACATAGAGGCTCTGATTGATTAATCAGGAGCTTCGTGTCCATTTGC 1387
Query 1379 ---CATCATTCCGT-GAATGTTCCGGCTCCGATGTTTGTTTTAAGGATATCATTCAATGT 1434
|| |||||| | ||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1388 TAGCAGCATTCC-TAGAATGCTCTGGCTCCGATGTTTGTTT-AAGGATATCATTCAATGT 1445
Query 1435 CTTAGAGATTAGTAAGTAGGGGTATTTACTAATTTAGGTGTTTGTAGCTCTTATTTCTTT 1494
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1446 CTTAGAGATTAGTAAGTAGGGGTATTTACTAATTTAGGTGTTTGTAGTTCTTATTTCTTT 1505
Query 1495 TGATTCTCTTCTTCCAAACTGTCAACTCAACTTTCCTGCAGATTTTACCAAGTTTTGAAG 1554
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1506 TGCTTCTCTTCTTCCAAACTGTCAACTCAACTTTCTTGCAGATTTTACCAAATTTTGAAG 1565
Query 1555 TTTATTT 1561
||| |||
Sbjct 1566 TTTTTTT 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77057836575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5