BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482866
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38570.1 | Symbols: | CONTAINS InterPro DOMAIN/s: PRC-barre... 1005 0.0
> AT2G38570.1 | Symbols: | CONTAINS InterPro DOMAIN/s: PRC-barrel-like
(InterPro:IPR011033); Has 300 Blast hits to 300 proteins
in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0;
Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128
(source: NCBI BLink). | chr2:16136689-16138886 REVERSE LENGTH=1298
Length=1298
Score = 1005 bits (544), Expect = 0.0
Identities = 870/1019 (85%), Gaps = 55/1019 (5%)
Strand=Plus/Plus
Query 1 ATGTGCAATTGCTCATCTTCCTTCGTCTCCCTTGCTCTTCCCGTCCTCAATGCTCGACTG 60
|||||||||||||||||||||||| | || || ||||||| || |||||||||||| ||
Sbjct 147 ATGTGCAATTGCTCATCTTCCTTC-T-TCTGTT-CTCTTCCAGTTCTCAATGCTCGATTG 203
Query 61 GTGAAACCCAATTCAGTAAA-TTGTAGATGGAGGCTCAGACGGATTCAACATTCGATCTT 119
|||||||||||||||| ||| |||| |||||||||||| ||||||||| ||||| ||| |
Sbjct 204 GTGAAACCCAATTCAG-AAACTTGTCGATGGAGGCTCAAACGGATTCAGCATTCAATCCT 262
Query 120 AAATTGCTCTTGGA-GGA-GAGCTCAA-TGTTATTTTGATTCGAATAACTCTGCCTTTCT 176
||||||| ||||| || | || | | ||| ||| || || | ||| |
Sbjct 263 CAATTGCTTTTGGATTGATTCGAAAAACTCTCCCTTT--CTCGGGCAATTCAG-TTTTAT 319
Query 177 CGGGCAATCGAGCAATAGAA--TCGTCTTTTGTTTGAGTTCATCATCACTACCTAATGAA 234
| | || |||| | | || || ||| ||| |||||||| | |||||| ||||||||
Sbjct 320 AGAGAAACCGAG--AGACAATTTCATCTGTTGCTTGAGTTC-T--TCACTATCTAATGAA 374
Query 235 GAAGATGTAGTGCATCAAACAGTGGAAAGTGATAGTGCAGAGTTACCTGGAGAAAGTTAT 294
|||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||| ||
Sbjct 375 GAAGATGTAGTGCATCAAACTGTGGGGAGTGATAGTGTAGAATTACCTGGAGAAAGTGAT 434
Query 295 TTGATTCGACTAGTAGGTGATAATGATCTTA-CTAACACTGGCTCTAAAGGATTCAAACA 353
||| ||||||||||||||||||||||||| | | | || || || ||||||||| ||
Sbjct 435 TTGGTTCGACTAGTAGGTGATAATGATCTGAGC-ATTACGGGTTCGCGAGGATTCAAGCA 493
Query 354 GACGACGACAAGATCGAATCTTGTTGCTAAGCAAGTTATTAGTATACAATCAGCTCTGAG 413
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 494 GTCGACGACAAGATCGAATCTTGTTGCTAAGCAAGTTGTTAGTATACAATCAGCTTTGAG 553
Query 414 TTTAGGATTTATCTCTCAGCTTTGGGTTGACACTTCTTCCTGGTTGGTTTTGGTGGTTGA 473
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 554 TTTAGGATTTATCTCTCAGCTTTGGGTTGACACTACTTCTTGGTTGGTTTTGGTGGTTGA 613
Query 474 TGTTAAACCAAGCTTGTTATCTGGAGAATCTGAGAGATTTCTGCTCAAAGACATTGTCCG 533
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 614 TGTTAAACCAAGCTTGCTATCTGGAGAATCTGAGAGATTTCTGCTCACAGACATTGTCCG 673
Query 534 GGTACTGCTATGTTTGGTTTCTCCTATGTTGA-AAGTG-G--TTTCATTTGGA-AATGTG 588
|| || || | | || |||| |||||| || || | | || ||||| | ||
Sbjct 674 GG---TG-GGTG-AT-G-TTGTCCT-TGTTGATAA-TGAGACTGTC--TTGGATACTG-A 721
Query 589 TTTACTTACAT-CTTAGGGTTTATATTAAGATCT-CT--GTTACAGAGTAGTGACACCAG 644
|| | | || || || || | || | || | ||||||||||||| |||||||
Sbjct 722 ATT-C-AAGATGGTT-GGACTT-GA--AACA-CTGGTAGGTTACAGAGTAGTTACACCAG 774
Query 645 GACGGCGAAACATTGG-AA------AGGTTACTCATTTAACATTAACTCGGGAATAGTTG 697
|| || |||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 775 GAGGGAGAAACATTGGAAAGGTTCGAGGTTACTCATTCAACATTAACTCGGGAATAGTTG 834
Query 698 AATCGCTTGAGCTCGATTCCTTCGGGGTAACTATCATACCATCAAGCCTGGTGAGTACAT 757
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 835 AATCGCTTGAGCTCGATTCCTTCGGGGTAACTATTATACCATCAAGCCTGGTGAGTACAT 894
Query 758 ACAGATTAGGTGTCGAGGACATAATCGAGGTCTTACAAGATATAGTTGTGGTTCACGAAG 817
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 895 ACAGATTAGATGTCGAGGATATAATCGAGGTCTTACAAGATATAGTTGTGGTTCAAGAAG 954
Query 818 ATGCAGCTTCTAGAAAACAGAGGTTGACTAAGGGACTCTGGGATGGTCAGTTTGATAGTG 877
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 955 ATGCAGCTTCTAGAAAACAGAGGTTGACTAAGGGACTCTGGGATGCTCAGTTTGATAGTG 1014
Query 878 AATACTCTGATGTTGAAGAGCTTGAAAGTTCATCTGATAGGAGACGGCGAAGGAGAAACA 937
||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1015 AATACCCTGATGTTGAAGATCTTGAAAGTTCATCTGATAGAAGACGGCGAAGGAGAAACA 1074
Query 938 ATAGATCCAACCGAAAGAAGAGAGATTTGGATGATGACGAATGGGACATATTCCGCTAG 996
|| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1075 ATCGATCCAACCGAAAAAAGAGAGATTTGGATGATGAAGAATGGGACATATTCCGCTAG 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5