BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482868
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38590.1 | Symbols: | F-box and associated interaction doma... 551 5e-156
AT5G41510.1 | Symbols: | F-box and associated interaction doma... 200 2e-50
AT4G33290.1 | Symbols: | F-box and associated interaction doma... 143 3e-33
AT5G41494.1 | Symbols: | pseudogene of F-box family protein | ... 128 1e-28
AT4G10740.1 | Symbols: | F-box and associated interaction doma... 104 2e-21
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 100 2e-20
AT4G09452.1 | Symbols: | Pseudogene of AT2G38590; F-box family... 86.1 6e-16
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 82.4 8e-15
AT3G22870.1 | Symbols: | F-box and associated interaction doma... 80.5 3e-14
AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7... 58.4 1e-07
> AT2G38590.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:16142897-16144184 FORWARD LENGTH=1288
Length=1288
Score = 551 bits (298), Expect = 5e-156
Identities = 371/403 (92%), Gaps = 17/403 (4%)
Strand=Plus/Plus
Query 1 ATGACGACCATGATCTCTAATCTTCCGACGGTTTTGATAGAGGAGATTTTTGTTAGGGTT 60
|||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 1 ATGACGACGATGATCTCTAATCTTCCAAGGGTTTTGATAGAGGAGATTTTTTTTAGGGTT 60
Query 61 CCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAAA 120
Query 121 AGTAGGAGCTTTCTGAAGTTGTACATTAGTAAAACAGCAACAAGAGAAGAGGAGTCCATG 180
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGTAGGAGCTTTAGGAAGTTGTACATTAGTAAAAGAGCAACAAGAGAAGAGGAGTCCATG 180
Query 181 ATGATCGCTATGATGAATTTCGATCTTTATTTGATGAGGGTCGTAGTTGACGACG---TT 237
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 181 ATGATCGCTATGATGAATTTCGATCTTTATTCAATGAGGGTCGTAGTTGACGACGACGTT 240
Query 238 GATCCATCTAAAGCGTTTaaaaagaaaagaaaaagaagaaagaaaaaagaaTCTATAGCG 297
||||||||||||||||||||||| |||| | | ||| |||||| |||||||||
Sbjct 241 GATCCATCTAAAGCGTTTAAAAA-AAAA-A----G--GAAT-AAAAAA---TCTATAGCG 288
Query 298 TTTAAACGTAAACCT-TGTTTCCTTGATGAACAAGTCAAGATATCTCAAGTCTTTCACTG 356
||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 289 TTTAAACGTCAACCTAT-TTTCCTTGATGAACAAGTCAAGATATCTCAAGTTTTTCACTG 347
Query 357 TGAGGGTTTATTGTTATGCATCTTGAAAGAAGACGATACAAGG 399
||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 348 TGAAGGTTTATTGTTATGCTTCTTAAAAGAAGACGATACAAGG 390
Score = 291 bits (157), Expect = 1e-77
Identities = 255/296 (86%), Gaps = 31/296 (10%)
Strand=Plus/Plus
Query 437 CTGTGGTGACTGTGGTGTTTCTCTCAACGGAAACACTTACTGGTGTGCTaaaaaaaGGAA 496
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 642 CTGTTGTGACCGTGGTGTTTCTCTCAACGGAAACACTTACTGGTGTGCTAAAGAAAGGAA 701
Query 497 CGCAGAAGACGATATTGTCGATAACATCATATGTTTTGATTTTACAAGA-GAGAGATTTG 555
||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||
Sbjct 702 AGCAGAAGACGATATTGTCGATCACATCATATCTTTTGATTTTACAA-ACGAGAGATTTG 760
Query 556 GGCCGCTTTTGCCTTTGCCGTCTA-GCCT-T--A---T-A-TATG-----G-A--T---- 594
|||||||||||||||||||||||| | | | | | | |||| | | |
Sbjct 761 GGCCGCTTTTGCCTTTGCCGTCTAAGGTTATGGAACATGAATATGAAATTGTAACTTTAT 820
Query 595 C--ATG--AAAGA-GA-A-GCTTTGCAGCTTTATTTCAGCATTACGAATCAGATTGGAAT 647
| ||| ||||| || | |||| |||||||||||||||||||||||| |||||||||||
Sbjct 821 CTTATGTTAAAGAAGAGAAGCTT-GCAGCTTTATTTCAGCATTACGAAGCAGATTGGAAT 879
Query 648 GAGTTTGATATATGGATTACGACTAAGATTGATGCTGAAATGGTGTCGTGGAGCAT 703
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 880 GAGTTTGATATATGGATTACGACTAAGATTGATGCTGAAGTGGTGTCGTGGAGCAT 935
Score = 206 bits (111), Expect = 4e-52
Identities = 129/137 (94%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 840 TTTGGTCCAAATCAAGAAACCTGCACGAGGGAAAAGGAAAAGACAAAGCAGCTTTGAAAA 899
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1152 TTTGGTCCAAATCAAGAAACCTGCACGAGGCAAAAGGAAAAGACAAAGCAGCTTAGAAAA 1211
Query 900 GCGTCTATTTGACCAAAACATGTTGAGACTTGAAGCATTTAAAAAGCTAGACT--T-CTT 956
|||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 1212 GCGTCTATTTGATCAAAACATGTTGAGACTTGAAGCATTTAAAAAGCTAGGCGGCTACTT 1271
Query 957 CTAGAAGCAATATGCAG 973
|||||||||||||||||
Sbjct 1272 CTAGAAGCAATATGCAG 1288
Score = 154 bits (83), Expect = 2e-36
Identities = 101/110 (92%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 706 GTTCCACATATATGCGACGGTTTCTTCATTGACGAGGAGAAGAAAATTGCCATGGGTTTT 765
|||||||||||||| || |||||||||||||| |||||||||||| | ||||||||||||
Sbjct 970 GTTCCACATATATGTGAAGGTTTCTTCATTGATGAGGAGAAGAAAGTCGCCATGGGTTTT 1029
Query 766 GAAGAAGAGTTCTATCGCAAAACATTTATCATCATTGGAGAGGATGGATA 815
|||||||| ||| |||||||||||||||||||||||||||| | ||||||
Sbjct 1030 GAAGAAGACTTCGATCGCAAAACATTTATCATCATTGGAGAAGCTGGATA 1079
> AT5G41510.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16607124-16608326 FORWARD LENGTH=1203
Length=1203
Score = 200 bits (108), Expect = 2e-50
Identities = 214/264 (81%), Gaps = 12/264 (5%)
Strand=Plus/Plus
Query 1 ATGACGACCATGATCTCTAATCTTCCGACGGTTTTGATAGAGGAGATTTTTGT-TAGGGT 59
||| |||| |||||||| |||||||| | || ||||||||||||||||||| | ||||||
Sbjct 1 ATGGCGACGATGATCTCCAATCTTCCAAGGGATTTGATAGAGGAGATTTTT-TCTAGGGT 59
Query 60 TCCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAA 119
||| |||| |||| ||| |||||||||||||||||||||||||||||||| | |||| ||
Sbjct 60 TCCCTTGACATCTATGAAAGCAGTGAGATTAACTTGCAAAAGTTGGAACAATTTATCTAA 119
Query 120 AAGT-AGGAGCTTT-CTGAAGTTGTACATTAGTAAAACAGCAACAAGAGAAGAGGAGTCC 177
|||| || |||||| | |||| || ||||| ||| | ||||||||||||||||| || |
Sbjct 120 AAGTGAG-AGCTTTAC-GAAGGTGCACATTGGTAGAGCAGCAACAAGAGAAGAGAAGACT 177
Query 178 ATGAT-GATCGCTATGATGAATTTCGATCTTTATTTGATGAGGGTCGT-AGTTGACGACG 235
||||| | ||| | ||||| | | | ||| |||| ||||| | || | | |||||||
Sbjct 178 ATGATAG-TCGATGTGATGCCTCACAAACTTAATTTAATGAGTATTGTCA-TCGACGACG 235
Query 236 TTGA-TCCATCTAAAGCGTTTaaa 258
|| | ||||||| || |||||||
Sbjct 236 TT-ACTCCATCTGCAGAGTTTAAA 258
> AT4G33290.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:16049573-16050865 FORWARD LENGTH=1293
Length=1293
Score = 143 bits (77), Expect = 3e-33
Identities = 105/117 (90%), Gaps = 7/117 (6%)
Strand=Plus/Plus
Query 288 ATCTATAGCGTTTAAACGTAAACCTT-GTT-TCCTTGATGAACAAGTCAAGATATCTCAA 345
|||||||| ||||||| ||||| ||| ||| | ||| | |||||||||||||||||||||
Sbjct 240 ATCTATAGAGTTTAAAGGTAAA-CTTAGTTGT-CTTAAGGAACAAGTCAAGATATCTCAA 297
Query 346 GTCTTTCACTGTGAGGGTTTATTGTTATGCATCTTGAAAGAAGACGATACAAGGATT 402
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 298 GTCTTTCACTGTGAGGGTTTATTGTTATGCATCTTGAAAGA---CGATACTAGGATT 351
Score = 78.7 bits (42), Expect = 1e-13
Identities = 92/115 (80%), Gaps = 8/115 (7%)
Strand=Plus/Plus
Query 456 TCTCTCAACGGAAACACTTACTGGTGTGCTaaaaaaaG-GAACGCAGAAGACGATATTGT 514
|||||||| || |||||||||||||||||| | | ||| ||| |||| | | ||
Sbjct 625 TCTCTCAAAGGGAACACTTACTGGTGTGCT-AGAGAAGAAAACTCAGATG--G---TT-A 677
Query 515 CGATAACATCATATGTTTTGATTTTACAAGAGAGAGATTTGGGCCGCTTTTGCCT 569
| || | || || ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 678 CAATCATATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGTCCGCTTCTGCCT 732
> AT5G41494.1 | Symbols: | pseudogene of F-box family protein
| chr5:16602589-16603438 FORWARD LENGTH=850
Length=850
Score = 128 bits (69), Expect = 1e-28
Identities = 98/111 (88%), Gaps = 6/111 (5%)
Strand=Plus/Plus
Query 840 TTTGGTCCAAATCAAGAAACCTGCACGAGGGAAAAGGA--AAAGACAAAGCAGCTTT-GA 896
|||||||||||||||||||||||||| | | ||||||| ||||||||||||| ||| ||
Sbjct 734 TTTGGTCCAAATCAAGAAACCTGCACTACGCAAAAGGATCAAAGACAAAGCAG-TTTAGA 792
Query 897 AAAGCGTCTATTTGAC-CAAAACATGTTGAGACTTGAAGCATTTAAAAAGC 946
||||| | ||||| | || |||||||||||||||||||||||||||||||
Sbjct 793 AAAGCCACGATTTG-CACAGAACATGTTGAGACTTGAAGCATTTAAAAAGC 842
Score = 110 bits (59), Expect = 3e-23
Identities = 93/110 (85%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 466 GAAACACTTACTGGTGTGCTaaaaaaaGGAACGCAGAAGACGATATTGTCGATAACATCA 525
|||||||||||||| ||||| | ||| ||| |||||| |||| |||||| |||| |
Sbjct 248 GAAACACTTACTGGCATGCTAGAGAAATGAATTTAGAAGAAAATATCGTCGATCACATAA 307
Query 526 TATGTTTTGATTTTACAAGAGAGAGATTTGGGCCGCTTTTGCCTTTGCCG 575
||||||||||||||||||||||||||||| | |||||| ||||| |||||
Sbjct 308 TATGTTTTGATTTTACAAGAGAGAGATTTAGACCGCTTCTGCCTCTGCCG 357
> AT4G10740.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:6617143-6618426 REVERSE LENGTH=1284
Length=1284
Score = 104 bits (56), Expect = 2e-21
Identities = 71/78 (91%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 326 AACAAGTCAAGATATCTCAAGTCTTTCACTGTGAGGGTTTATTGTTATGCATCTTGAAAG 385
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 293 AACAAGTCAAGATATCTCAAGTCTTTCATTGTGAGGGTTTATTATTATGCATCTTAAAAG 352
Query 386 AAGACGATAC-AAGGATT 402
| || ||||| ||| |||
Sbjct 353 ACGATGATACTAAG-ATT 369
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 100 bits (54), Expect = 2e-20
Identities = 71/79 (90%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 325 GAACAAGTCAAGATATCTCAAGTCTTTCACTGTGAGGGTTTATTGTTATGCATCTTGAAA 384
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 754 GAACAGGTCAAGATATCTCAAGTCTTTTGTTGTGAGGGTTTATTGTTATGCATCTTGAAA 813
Query 385 GAAGACGATAC-AAGGATT 402
|| || ||||| ||| |||
Sbjct 814 GATGATGATACTAAG-ATT 831
Score = 93.5 bits (50), Expect = 4e-18
Identities = 98/121 (81%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 454 TTTCTCTCAACGGAAACACTTACTGGTGTGCTaaaaaaaGGAACGCAGAAGACGATATTG 513
|||||||||| ||||||||||||||| | |||||| || || ||||| | | |||
Sbjct 1100 TTTCTCTCAAGGGAAACACTTACTGGGGCGCTAAAGAACGGCACGCATACG--GAT-CCA 1156
Query 514 TCGATAACATCATATGTTTTGATTTTACAAGAGAGAGATTTGGGCCGCTTTTGCCTTTGC 573
| ||| | || || ||||||||||||||||||||||||||||| |||||| | ||| |||
Sbjct 1157 TTGATCATATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTACCTCTGC 1216
Query 574 C 574
|
Sbjct 1217 C 1217
> AT4G09452.1 | Symbols: | Pseudogene of AT2G38590; F-box family
protein | chr4:5985822-5986654 FORWARD LENGTH=833
Length=833
Score = 86.1 bits (46), Expect = 6e-16
Identities = 97/120 (81%), Gaps = 9/120 (8%)
Strand=Plus/Plus
Query 453 GTTTCTCTCAACGGAAACACTTACTGGTGTGCTaaaaaaaGGAACGCAGAAGACGATATT 512
|||||||| || ||||| | ||| ||||||||||| ||||||| | | |||| | ||
Sbjct 303 GTTTCTCTTAAGGGAAATAGTTATTGGTGTGCTAATAAAAGGAGCTCCGAAG--G-TA-- 357
Query 513 GTC--G-ATAACATCATATGTTTTGATTTTACAAGAGAGAGATTTGGGCCGCTTTTGCCT 569
| | | || |||| || | |||||||||||||||||||||||||||||||||| |||||
Sbjct 358 G-CAAGAATCACATAATCTATTTTGATTTTACAAGAGAGAGATTTGGGCCGCTTCTGCCT 416
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 82.4 bits (44), Expect = 8e-15
Identities = 62/70 (89%), Gaps = 3/70 (4%)
Strand=Plus/Plus
Query 325 GAACAAGTCAAGATATCTCAAGTCTTTCACTGTGAGGGTTTATTGTTATGCATCTTGAAA 384
|||||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 286 GAACAAGTCAAGATATCTCAAGTCTTTCACTGCGAGGGTTTGTTACTATGCGTCTTG--- 342
Query 385 GAAGACGATA 394
||||||||||
Sbjct 343 GAAGACGATA 352
> AT3G22870.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8096230-8097471 FORWARD LENGTH=1242
Length=1242
Score = 80.5 bits (43), Expect = 3e-14
Identities = 92/115 (80%), Gaps = 5/115 (4%)
Strand=Plus/Plus
Query 288 ATCTATAGCGTTTAAACGTAAACCTT-GTTTCCTTGATGAACAAGTCAAGATATCTCAAG 346
||||| || | ||||| | ||| ||| || | |||| |||||||| ||| ||||| | |
Sbjct 219 ATCTACAGAGATTAAAGGCAAA-CTTACTTGCTTTGACGAACAAGTAAAGGTATCT-ATG 276
Query 347 -TCTTTCACTGTGAGGGTTTATTGTTATGCATCTTGAAAGAAGACGATAC-AAGG 399
| ||||| || ||||||||||||||||||||||||||||| || |||| ||||
Sbjct 277 TTGTTTCATTGCGAGGGTTTATTGTTATGCATCTTGAAAGACGATAATACTAAGG 331
> AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7238999
REVERSE LENGTH=1089
Length=1089
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 526 TATGTTTTGATTTTACAAGAGAGAGATTTGG 556
|||||||||||||||||||||||||||||||
Sbjct 656 TATGTTTTGATTTTACAAGAGAGAGATTTGG 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5