BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482870
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38610.1 | Symbols: | RNA-binding KH domain-containing prot... 2102 0.0
> AT2G38610.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147113-16149873 REVERSE LENGTH=1452
Length=1452
Score = 2102 bits (1138), Expect = 0.0
Identities = 1242/1291 (96%), Gaps = 11/1291 (1%)
Strand=Plus/Plus
Query 119 ACCCATGTCTGGTTTATACAACAACTCCTCTTACTTCTCTCCTGCTCGAGCTGCTTCTCC 178
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 149 ACCCATGTCTGGTTTATACAATAACTCATCTTACTTCTCTCCTGCTCGAGCTGCTTCTCC 208
Query 179 TCAGATTAGAAGCACTCCTGAGATCGACAGTTCTCAGTACTTGACGGAGCTTCTCGCTGA 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 209 TCAGATTAGAAGCACTCCTGAGATCGACAGCTCTCAGTACTTGACGGAGCTTCTCGCTGA 268
Query 239 ACATCAAAAGCTTACTCCTTTTATGCAGGTCCTACCTATATGTAGCCGTCTATTGAATCA 298
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 269 ACATCAAAAGCTTACTCCTTTTATGCAGGTCCTACCCATATGTAGCCGTCTATTGAATCA 328
Query 299 AGAGATGTTCAGGGTCTCTGGAATGATGTCTAACCAAGGATTTGGTGATTTTGATAGACT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 AGAGATGTTCAGGGTCTCTGGAATGATGTCTAACCAAGGATTTGGTGATTTTGATAGACT 388
Query 359 TCGACATAGAAGTCCCAGCCCTATGGCTTCTTCTAATCTTATGTCTAATGTTTCTAATAC 418
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 389 TCGACACAGAAGTCCCAGCCCTATGGCTTCTTCTAATCTTATGTCTAATGTCTCTAATAC 448
Query 419 CGGGTTAGGTGGCTGGAACGGCCTCTCTCAGGAGAGACTTAGTGGAACACCTGGAATGAC 478
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 CGGGTTAGGAGGCTGGAACGGCCTCTCTCAGGAGAGACTTAGTGGAACACCTGGAATGAC 508
Query 479 AATGGATTGGCAAGGTGCTCCTGGAAGCCCCAGTTCATACACTGTCAAAAGGATATTGCG 538
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 509 AATGGATTGGCAAGGTGCACCTGGAAGCCCCAGTTCATACACCGTCAAAAGGATATTGCG 568
Query 539 TCTGGAGATTCCTGTAGATAACTATCCTAATTTCAATTTTGTTGGACGACTTCTCGGCCC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TCTGGAGATTCCTGTAGATAACTATCCTAATTTCAATTTTGTTGGACGACTTCTCGGCCC 628
Query 599 TAGAGGCAACTCATTAAAACGTGTTGAAGCTACCACGGGTTGCCGTGTATTCATCAGAGG 658
|||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 629 TAGAGGCAACTCGTTAAAACGCGTTGAAGCTACCACCGGTTGCCGAGTATTCATCAGAGG 688
Query 659 GAAAGGGTCAATCAAGGATCCCGAAAAGGAAGATAAACTAAGGGGAAGACCGGGCTATGA 718
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 689 GAAAGGGTCAATCAAGGATCCCGAAAAGGAAGATAAATTAAGGGGAAGACCTGGCTATGA 748
Query 719 ACACCTGAATGAGCAACTCCACATCTTAATAGAGGCAGATCTTCCAGCAAGTATCGTGGA 778
|||| |||||||||| || ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 749 ACACTTGAATGAGCAGCTTCACATCTTAATAGAGGCAGATCTTCCAGCTAGTATTGTGGA 808
Query 779 GATACGTCTGCGACAAGCTCAAGAAATTATAGAAGAGTTACTAAAGCCTGTGGACGAATC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 809 GATACGTCTGCGACAAGCTCAAGAAATTATAGAAGAGTTACTAAAGCCTGTGGACGAGTC 868
Query 839 GCAAGATTTCATAAAGAGACAGCAGCTGAGGGAACTAGCATTGCTAAACTCGAACAACCT 898
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 869 GCAAGATTTCATAAAGAGACAGCAGCTGAGGGAACTGGCATTGCTAAACTCGAACAACCT 928
Query 899 GAGGGAAGAGAGTCCCGGGCCAAGTGGCGGTGGAAGCGTTTCGCCTTTCAATTCAAGTGG 958
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 929 GAGGGAAGAGAGTCCGGGGCCAAGCGGAGGTGGAAGCGTTTCGCCTTTCAATTCAAGTGG 988
Query 959 TAAACGCCCGAAAACAGGATGCTAAGCAGCGTTTTGTTTGTCTCGCCCAAAACGCTCCTT 1018
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 989 TAAACGCCCGAAAACAGGATGCTAAGTAGCGTTTTGTACGTCTCGCCCAAAACGCTCCTT 1048
Query 1019 TAAGCCTTATAATGGTTTCTTCAACCAAAAGTACATGTCTGCATGCATTACACAGACGCA 1078
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 CAAGCCTTATAATGGTTACTTCAACCAAAAGTACATGTCTGCATGCATTACACAGACGCA 1108
Query 1079 CATGTGTATATCTGGTTTCTCCAGTAGTGGCTGCAATGGTGGTGGTCTGGTCAAGGCCTG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CATGTGTATATCTGGTTTCTCCAGTAGTGGCTGCAATGGTGGTGGTCTGGTCAAGGCCTG 1168
Query 1139 CCCTGGTCTCTCTCGGGTGAGCGACCCTGTGGctttcgtttttcttcttctttattttca 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1169 CCCTGGTCTCTCTCGGGTGAGCGACCCTGTGGCTTTCGTTTTTCTTCTTCTTTATTTTAA 1228
Query 1199 t-ttttgttttt-ttt--cCTCATCAAAAATTCATTACAGATTATT-AAAAAATATTCAT 1253
|||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1229 ACTTTTGTTTTTCTTTTTCCTCATCAAAAATTCATTACAGATTATTTAAAAAAGATTCAT 1288
Query 1254 GCaaaaaaaaaaaaaaaTTAGTATGAGatatata-taatatataGGGAGAAAAAGATGTT 1312
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||
Sbjct 1289 GCAAAAAAAAAAAAAAAG-AGTATGAGATATATAATA-TATATAGGGAGAAAAAGATGTG 1346
Query 1313 GATGCCTTGGGAGGGCGTGGACTGAAA-TTCTTATTGTAAAAACATAAACGAAAAAACAC 1371
| || |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 1347 G-TGGCTTGGGAGGGCGTGGACTGAAAATTCTTATTGTATAAACATAAAC-AAAAAACAC 1404
Query 1372 ATTTATTGGATTGATTCTTATTGTTTGATTT 1402
||||||||||||||||||||| |||||||||
Sbjct 1405 ATTTATTGGATTGATTCTTATCGTTTGATTT 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5