BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482873
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38640.1 | Symbols: | Protein of unknown function (DUF567) ... 1214 0.0
> AT2G38640.1 | Symbols: | Protein of unknown function (DUF567)
| chr2:16157604-16158561 REVERSE LENGTH=799
Length=799
Score = 1214 bits (657), Expect = 0.0
Identities = 759/806 (94%), Gaps = 15/806 (2%)
Strand=Plus/Plus
Query 1 CACATACAAACATCATCAAC---TC-ATCTTCTCCAAACAAGAATCATCAAAGCCCAAAG 56
||||| |||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 3 CACATTCAAACATCATCAACTTATCGATCTTCTCC-AACAAGAATCATCAAAGCCCAAAG 61
Query 57 AAACACAACAGAGAATACAAACAAAAAGAGATGACAAAAGTTCACCCAAAATTCCCAAAC 116
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |
Sbjct 62 AAACACAACAGAGAAT---AA-AAAAAGAAATGACAAAAGTTCACCCAAAATTCCCAAGC 117
Query 117 ACATGCGAAGAGAGCTTGTGTGATAGTAAAGCAGCGGTGGTTTTAACAGTGTGGAAGAAG 176
|||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct 118 ACATGCGAAGAGAGCTTGTGTGATAGCAAAGCAGCAGTTGTTTTAACGGTGTGGAAGAAG 177
Query 177 TCCCTTCTCTTCAACTGCGACGGATTCACGGTCTACAACGCCAATGGAGAGCTTGTCTTT 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 178 TCCCTTCTCTTCAACTGCGACGGATTCACGGTTTACAACGCCAATGGAGAGCTTGTCTTT 237
Query 237 AGGGTTGACAACTACATGAATTGTCCTAGAGACAACATCGTCCTTATGGATGCTTCCGGC 296
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGAGTTGACAACTACATGAATTGTCCTAGAGACAACATCGTCCTTATGGATGCTTCCGGC 297
Query 297 TTTCCCCTCCTCTCTATCCGCCGCAAGAAGTTGAGTCTTGGAGATTGCTGGATGGTATAC 356
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTCCCCTCCTCTCCATTCGCCGCAAGAAGTTGAGTCTTGGAGATTGCTGGATGGTATAC 357
Query 357 GATGGAGAAACAGAGAGAGACCCAATATTGACGGCGAGAAAGAACGTTAACATAATAACA 416
|||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |
Sbjct 358 GATGGAGAAACAGAGAGAGATCCAATATTCACGGCGAGAAAGAACGTTAGCATAATATCT 417
Query 417 AACCGGAGGAGCTTGGCGTGGGTTAGCGCGAAGAAGACGGTGTTGTACGAGATAGAAGGA 476
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 AACCGGAAAAGCTTGGCGTGGGTTAGCGCAAAGAAGACGGTGTTGTACGAGATAGAAGGA 477
Query 477 TCGTACAGTCAGAGAAGCTGCAAAATATTGGACGAGAGGAGGAACAAGAAGAAAACGGCG 536
|| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 TCTTACGGTCAAAGAAGCTGCAAAATATTGGATGAGAGGAGGAACAAGAAGAAAACGGCG 537
Query 537 GAGATCAAGAGGAAAGAAACGGTGATCGGAGGAGTTGCCTTTGGCAAAGATGTGTTTAAG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 538 GAGATCAAGAGGAAAGAAACGGTGATCGGAGGAGTTGCCTTTGGCAAAGATGTCTATAAG 597
Query 597 CTTATAGTTGAATCGGAGATGGAGCCTCGTGTGGCCATGGCACTTACCATCATCCTCGAC 656
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 CTTATCGTTGAATCGGAGATGGAACCTCGTGTGGCCATGGCACTTACCATCATCCTCGAC 657
Query 657 CAAATGTTTAGATCTTCTTGAttttctttttttttaaggttttattttta-cgtgtatat 715
||||||||| |||||||||||||||| ||||||| ||||||| ||||||| |||||||||
Sbjct 658 CAAATGTTTCGATCTTCTTGATTTTCATTTTTTT-AAGGTTT-ATTTTTAACGTGTATAT 715
Query 716 tagttcctttttgtttatgtaatttatGCGATGTGTTCCTTCCTAAATGTACACATGAAC 775
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 TAGTTCCTTTTTGTTTATGTAATTTATGCAATGTGTTCCTTCCTAAATGTACACATGAAT 775
Query 776 AACAGAGAACtttttttttCGTTTTG 801
| |||||||||||||||||| |||
Sbjct 776 A---GAGAACTTTTTTTTTCGTATTG 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5