BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482876
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38660.1 | Symbols: | Amino acid dehydrogenase family prote... 1949 0.0
> AT2G38660.1 | Symbols: | Amino acid dehydrogenase family protein
| chr2:16165958-16168386 FORWARD LENGTH=1335
Length=1335
Score = 1949 bits (1055), Expect = 0.0
Identities = 1247/1335 (93%), Gaps = 32/1335 (2%)
Strand=Plus/Plus
Query 7 TCACTCGTTGAATCCTAAACTCCGCTATGCCTAGCGATATTTTTCAACGCCATTGACGAC 66
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TCACTCGTTGAATCCTAAACTCCGGTATGCCTAGCGATATTTTTCAACGCCATTGACGAC 60
Query 67 ACTTTATATACCACTGTGACTGTTCTTTTAGTTTCGATCATGTTAATGATCGCGAGGAAA 126
||||||||| | | |||| |||| | | | |||||||||||||||||||||
Sbjct 61 GCTTTATATA-C-C----ACTG---TTTT-G---AG-T-ATGTTAATGATCGCGAGGAAA 105
Query 127 GCTTTGGCCTCAGCGCATAGTAAGGC-TATTCGTTTGACAACAAGGGACGTACATTGTTT 185
||||||||||| ||||||| |||||| | |||||||| |||||||||| |||||||| ||
Sbjct 106 GCTTTGGCCTCGGCGCATACTAAGGCGT-TTCGTTTGGCAACAAGGGATGTACATTGCTT 164
Query 186 TAGTTCCATCTTAGTGTCTCCTCCTCTGGTGTCCCTTGACTTGCCTGAAGATTGGATTCC 245
||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 165 TAGTTCCATCTTAGTGTCTCCTCCTCTCGTGTCACTTGACTTGCCTGAAAATTGGATTCC 224
Query 246 TTACTCTGATCCTCTACCACCTGTTTCCTTTGAGACTGAACAGAAGACTGTGGTGATAGA 305
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TTACTCTGATCCTCCACCTCCTGTTTCCTTTGAGACTGAACAGAAGACTGTGGTGATAGA 284
Query 306 TGGAAATGTTATCGCTGAGGAAATTAGAACAAAGATTATTAGTGAAGTGGGGAAGATGAA 365
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 285 TGGTAATGTTATCGCTGAGGAAATCAGAACAAAGATTATTAGTGAAGTGGGGAAGATGAA 344
Query 366 AAAGGCTGTTGGAAAAGTCCCTGGTCTTGCCGTTGTTTTGGTTGGTCAACAAAGAGACTC 425
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 345 AAAGGCTGTTGGAAAAGTCCCTGGTCTTGCTGTTGTTTTGGTTGGTGAACAAAGAGACTC 404
Query 426 CCAAACTTATGTTCGCAACAAAATTAAAGCTTGTGAAGAAACTGGCATTAAATCTGTTTT 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GCAAACTTATGTTCGCAACAAAATTAAAGCTTGTGAAGAAACTGGCATTAAATCTGTTTT 464
Query 486 GGCTGAATTGCCAGAGGATTGTACTGAAGGACAGATTCTTAGTATATTGA-AAAATTTCA 544
||||||||| ||||||||||||||||||||||||||| | ||| |||||| |||| ||||
Sbjct 465 GGCTGAATTACCAGAGGATTGTACTGAAGGACAGATTATCAGTGTATTGAGAAAA-TTCA 523
Query 545 ATGAAGACACTTCCATTCATGGGATTCTTGTGCAGCTTCCGTTGCCCCAACATCTTGATG 604
|||||||||| || ||||| || ||||||||||| ||||| || |||||||||||| |||
Sbjct 524 ATGAAGACACGTCTATTCACGGAATTCTTGTGCAACTTCCTTTACCCCAACATCTTAATG 583
Query 605 AATCAAAAATCTTGAATATGGTGAGATTGGAGAAAGATGTTGATGGGTTTCATCCATTAA 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AATCAAAAATCTTGAATATGGTGAGATTGGAGAAAGATGTTGATGGGTTTCATCCATTAA 643
Query 665 ACGTGGGAAATCTTGCAATGAGAGGGAGGGAACCGCTGTTTGTATCTTGCACTCCTAAGG 724
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 ACGTGGGGAATCTTGCAATGAGAGGGAGGGAACCGCTGTTTGTATCTTGCACTCCTAAGG 703
Query 725 GCTGTGTGGAGTTGTTGATAAGAGCAGGCGTTGAAATAGCAGGAAAAAATGCTGTGGTGA 784
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
Sbjct 704 GCTGTGTGGAGTTGTTGATAAGAACGGGTGTTGAAATAGCAGGAAAAAATGCTGTGGTCA 763
Query 785 TAGGAAGAAGCAACATCGTTGGACTACCAATGTCTTTATTATTGCAGAGGCATGACGCGA 844
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TAGGCAGAAGCAACATCGTTGGACTACCAATGTCTTTATTATTGCAGAGGCATGACGCGA 823
Query 845 CAGTAAGCACGGTGCATGCGTTTACAAAGGATCCAGAGCACATTACTAGGAAGGCGGATA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CAGTAAGCACGGTGCATGCGTTTACAAAGGATCCAGAGCACATTACTAGGAAGGCGGATA 883
Query 905 TCGTTATAGCAGCAGCGGGTATACCCAATTTAGTTCGTGGAAGTTGGCTCAAGCCTGGAG 964
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 884 TCGTTATAGCAGCAGCGGGTATACCTAATTTAGTTCGTGGAAGTTGGCTTAAGCCTGGAG 943
Query 965 CAGTTGTCATTGATGTTGGAACATCTCCAGTTGAGGATAGTAGCTGTGAGTATGGTTACC 1024
||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||
Sbjct 944 CAGTTGTCATTGATGTTGGAACAACTCCAGTCGAGGATAGTAGCTGTGAGTTTGGTTACC 1003
Query 1025 GTCTTGTCGGGGATGTATGTTACGAGGAAGCTTTAGGTGTTGCCTCGGCTATCACTCCTG 1084
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1004 GTCTTGTCGGGGATGTATGTTACGAGGAAGCGTTAGGTGTTGCCTCGGCTATCACTCCCG 1063
Query 1085 TTCCTGGAGGAGTTGGACCAATGACGATCACCATGCTACTATGCAATACTTTAGATGCTG 1144
| || |||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 1064 TACCGGGAGGAGTTGGACCTATGACGATCACCATGCTACTATGCAATACTTTGGAGGCTG 1123
Query 1145 CTAAGCGGATATTCCTCTGA-TCATGGTATCTCTGTCTATTACTAAAT-T-TT--GTAAA 1199
|||||||||| ||||||||| | ||||||||||||||||||||||||| | || ||||
Sbjct 1124 CTAAGCGGATCTTCCTCTGAGT-ATGGTATCTCTGTCTATTACTAAATATATTTTGTAAT 1182
Query 1200 ATTAGATAGGAGACTCCATGTTGTGTTGGAGTTATTAACAATCTCTTTCAATTTGAATTA 1259
||||||||||||||||||| ||| | | |||||||||| |||||||| | ||||||
Sbjct 1183 GTTAGATAGGAGACTCCATGCTGT-TCG-AGTTATTAACGATCTCTTT---T--GAATTA 1235
Query 1260 TTATATAATAGACCTGGCGATTGTGATGCCATGGTTTATCCTAACTCATCAACATCTTTA 1319
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1236 TTGTATAATAGACCTGGCGATTGTGATGCCATGGTTTATCCTAACTCATCAGCATCTTTA 1295
Query 1320 GCATCAAGTTCAACT 1334
|||||||||||||||
Sbjct 1296 GCATCAAGTTCAACT 1310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5