BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482879
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38680.1 | Symbols: | 5'-nucleotidases;magnesium ion bindin... 536 1e-151
> AT2G38680.1 | Symbols: | 5'-nucleotidases;magnesium ion binding
| chr2:16174011-16176080 REVERSE LENGTH=1068
Length=1068
Score = 536 bits (290), Expect = 1e-151
Identities = 305/312 (98%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 473 AGGTTTTGAGGCAGAACCTTGGTAGAACTTTCAAGAATGTTAAGATTGTATCTAACTGGA 532
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 599 AGGTTTTGAGGCAGAACCTTGATAGAACTTTCAAGAATGTTAAGATTGTATCTAACAGGA 658
Query 533 TGGTGTTCAATGATGATGGACAGCTCGTGTCTTTCAAAGGAAAGCTAATTCACGTGCTAA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGGTGTTCAATGATGATGGACAGCTCGTGTCTTTCAAAGGAAAGCTAATTCACGTGCTAA 718
Query 593 ACAAAAACGAACACGCTTTAGACATGGCTGCTCCACTTCATGATCGACTTGGTGTTGACA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACAAAAACGAACACGCTTTAGACATGGCTGCTCCACTTCATGATCGACTTGGTGTTGACA 778
Query 653 TTGGTGAGGAAGATGAAGAAAATGTAAACATGAAACA-ACGAACGAATGTTTTGCTTATG 711
||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct 779 TTGGTGAGGAAGATGAAGAAAATGTAAACATGAAAGAGA-GAAGGAATGTTTTGCTTATG 837
Query 712 GGAGATCATTTGGGGGATTTAAGGATGTCTGATGGACTGGATTATGAAACTCGGATATCT 771
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 838 GGAGATCATTTGGGGGATTTAAGGATGTCTGATGGACTGGATTATGAGACTCGGATATCT 897
Query 772 ATTGGGTTTCTG 783
||||||||||||
Sbjct 898 ATTGGGTTTCTG 909
Score = 442 bits (239), Expect = 2e-123
Identities = 268/282 (95%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 120 CAAGGAAACGCATATTACGATGCTAAGAGGCAAGCATTATATGATCACTATCATCCTCTT 179
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 307 CAAGGAGACGCATATTACGATGCTAAGAGGCAAGCCTTATATGATCACTATCATCCTCTT 366
Query 180 GAGATTTCTCCTGTTATTCCCATTGATGAGAAAACCAAACTCATGGAAG--TGGTGGAGT 237
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 367 GAGATTTCTCCTGTGATTCCCATTGATGAGAAAACCAAACTCATGGAAGAATGGTGGGGT 426
Query 238 AAAACTCATGAGCTTCTCATTGAGGGAGGTTTAACATATGAGGCAATCAAGAAATCTGTT 297
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 427 AAAACTCATGAGCTTCTCATTGAGGGAGGTTTGACATATGACGCAATCAAGAAATCTGTT 486
Query 298 GCGAATTCCTCCATAGCTTTTAGAGAAGGTGTGACTGAGCTTTTTGAATTTTTGGAGAAA 357
|||||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 487 GCGAATTCTTCCATAGCTTTTAGAGAAGGTGTGTCTGAACTTTTCGAATTTTTGGAGAAA 546
Query 358 AAGGAGATCCCAGTTCTGATATTTTCAGCAGGACTTGCTGAT 399
||||||||||| |||||||| |||||||||||||||||||||
Sbjct 547 AAGGAGATCCCTGTTCTGATTTTTTCAGCAGGACTTGCTGAT 588
Score = 130 bits (70), Expect = 2e-29
Identities = 74/76 (97%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11 CTGTGATAGCTCATCCTCGAGCTCTCACCGATAAGATAACCCTAATTCGTGACGCGGGTC 70
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 149 CTGTGATAGCTCATCCTCGAGCTCTCACCGATAAGATGACTCTAATTCGTGACGCGGGTC 208
Query 71 CTTCCAAATTCCAGGT 86
||||||||||||||||
Sbjct 209 CTTCCAAATTCCAGGT 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5