BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482881
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38700.1 | Symbols: MVD1, ATMVD1 | mevalonate diphosphate de... 2534 0.0
AT3G54250.1 | Symbols: | GHMP kinase family protein | chr3:200... 1380 0.0
> AT2G38700.1 | Symbols: MVD1, ATMVD1 | mevalonate diphosphate
decarboxylase 1 | chr2:16180696-16183946 REVERSE LENGTH=1622
Length=1622
Score = 2534 bits (1372), Expect = 0.0
Identities = 1525/1596 (96%), Gaps = 21/1596 (1%)
Strand=Plus/Plus
Query 1 CCTTATTTTAATCTCCCACCTGATTTGAGCTGTTTC--TCTTTTTCGAACTCTCCGTCAC 58
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 28 CCTTATTTTAATCTCCCACCTGATTTGAGCTGTTTCTTTCTCTTTCGAACTCTCCGTCAC 87
Query 59 TTTCATTTC--CTC-CTTTGAATCTTCTGAGAAAGCT--ACAGATCTCTGGATTCGAAAG 113
|| |||||| || |||||||||||| |||||| ||||||||||| | ||||||
Sbjct 88 TTCCATTTCATTTCTATTTGAATCTTCT--CAAAGCTACACAGATCTCTGAAATCGAAAA 145
Query 114 AGCTTGAGCTGTGCTAATGGCGGAGGAGAAATGGGTGGTGATGGTGACGGCACAGACGCC 173
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 146 AGCTTGAGCTGTGTTAATGGCGGAGGAGAAATGGGTGGTGATGGTGACGGCGCAGACTCC 205
Query 174 GACGAATATCGCCGTGATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCAT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 206 AACGAATATCGCCGTGATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTTCCCAT 265
Query 234 TAACGATAGCATTAGCGTCACGCTTGATCCTGATCACCTCTGTACTCTCACCACCGTCTC 293
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 266 TAATGATAGCATTAGCGTCACGCTTGATCCTGATCACCTCTGTACTCTCACCACCGTCGC 325
Query 294 TGTTAGTCCTTCCTTTGATCGAGATCGAATGTGGCTCAATGGCAAGGAAATCTCGCTTTC 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TGTTAGTCCTTCCTTTGATCGAGATCGAATGTGGCTCAATGGCAAGGAAATCTCGCTTTC 385
Query 354 TGGAAGTAGGTACCAGAATTGCTTGAGGGAAATTCGAAGTCGTGCTGATGATGTTGAAGA 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 386 TGGAAGTAGGTACCAGAATTGCTTGAGGGAAATTCGAAGTCGTGCTGATGATGTAGAAGA 445
Query 414 TAAAGAAAAGGGTATCAAGATTGAGAAGAAGGATTGGGAGAAATTGCATCTGCACATTGC 473
||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 446 TAAAGAAAAGGGTATCAAGATTGCGAAGAAAGATTGGGAGAAGCTGCATCTGCACATTGC 505
Query 474 TTCTCATAATAATTTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGTTTTGCTTG 533
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 506 TTCTCATAACAACTTCCCTACTGCTGCTGGCTTAGCATCTTCTGCTGCTGGTTTTGCTTG 565
Query 534 CTTAGTTTTTGCTCTTGCCAAGTTGATGAATGTAAATGAAGATCCAAGCCAACTTTCTGC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 CTTAGTTTTTGCTCTTGCCAAGTTGATGAATGTAAATGAAGATCCAAGCCAACTTTCTGC 625
Query 594 TATAGCAAGGCAAGGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGGGGATTTGTCAAGTG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TATAGCAAGGCAAGGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGGGGATTTGTCAAGTG 685
Query 654 GAACATGGGAAACAAAGAAGATGGGAGTGACAGTGTTGCAGTTCAACTGGTAGATGATAA 713
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 686 GAATATGGGAAACAAAGAAGATGGAAGTGACAGTGTTGCAGTTCAACTGGTAGATGATAA 745
Query 714 GCATTGGGATGATCTTGTTATCATTATTGCTGTGGTTAGTTCACGAGAGAAGGAAACAAG 773
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 746 GCACTGGGATGATCTTGTTATCATTATTGCTGTGGTTAGTTCACGACAGAAGGAAACAAG 805
Query 774 CAGCACCTCGGGAATGCGTGAGAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 CAGCACCTCGGGAATGCGTGAGAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAA 865
Query 834 GGAAGTTGTCCCAGTACGGATTTTGCAAATGGAAGAAGCTATAAAGAATCGAGATTTTAC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 866 GGAAGTTGTCCCAGTACGGATTTTGCAAATGGAAGAAGCTATAAAGAATCGAGATTTCAC 925
Query 894 ATCTTTTACAAAATTGACGTGTTCAGACAGTAATCAGTTTCATGCTGTTTGTATGGATAC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 ATCTTTTACAAAATTGACGTGTTCAGACAGTAATCAGTTTCATGCTGTTTGTATGGATAC 985
Query 954 ATCTCCACCCATATTCTACATGAATGACACCTCCCACAGGATAATCAGCTTAGTTGAAAA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 ATCTCCACCCATATTCTACATGAATGACACCTCCCACAGGATAATCAGCTTAGTTGAAAA 1045
Query 1014 GTGGAACCGTTCTGCCGGTACACCAGAGATTGCTTATACATTTGATGCTGGCCCAAATGC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GTGGAACCGTTCTGCCGGTACACCAGAGATTGCTTATACATTTGATGCTGGCCCAAATGC 1105
Query 1074 AGTTC-TGATTGCAAGAAACAGGAAAGTAGCAGTTGAATTGATGCAGGGGCTGCTCTACT 1132
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1106 AGT-CATGATTGCAAGAAACAGGAAAGTAGCAGTTGAATTGCTGCAGGGGCTGCTCTACT 1164
Query 1133 GCTTCCCTCCTAAGCCTGACACAGACATGAAGAGTTATGTACTGGGTGATACATCGATTG 1192
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1165 GCTTCCCTCCTAAGCCTGACACAGACATGAAGAGTTACGTACTGGGGGATACATCGATAG 1224
Query 1193 TAAAAGAGGCAGGCTTGGAAGGAGAGCTCCCACAAGGAATTAAAGACAAGATTGGAAATC 1252
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 1225 TAAAAGAGGCAGGCTTGGAAGGAGAGCTTCCACAAGGAATTAAAGACAAAATTGGAAGTC 1284
Query 1253 AGGATCAAAAAGGTGAAGTGAGTTATTTTATATGCAGCAGACCTGGAAGAGGTCCTGTGG 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 AGGATCAAAAAGGTGAAGTGAGTTATTTTATATGCAGCAGACCTGGAAGAGGTCCTGTGG 1344
Query 1313 TGCTTCAAGACCAAACTCAAGCCCTTCTCCATCCTCAAACTGGCCTCCCCAAATAACCAT 1372
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1345 TGCTTCAAGACCAAACTCAAGCTCTTCTCCATCCTCAAACTGGCCTCCCCAAATAACCAT 1404
Query 1373 TTATATGTCTTGTTATTACTGCAACTCTGAGATTTGCAACAGCTTG-TCTTTTGCTTTGC 1431
|| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1405 TTCTATGTCTTGTTGTTACTTCAACTCTGAGATTTGCAACAGCTTCATCTTTTGCTTTGC 1464
Query 1432 CACCTCTTACTCTTGTCCTAAGAGAGCACTCATCTGAATCTTT-CTCTAATTATTTGTGT 1490
|| ||| ||||||||||||||||||||||| ||||||||||| | | ||||||||||||
Sbjct 1465 CAGCTCCAACTCTTGTCCTAAGAGAGCACTCTTCTGAATCTTTTCCC-AATTATTTGTGT 1523
Query 1491 TTACATACAATTTTCTTCTGCATCGGGTGCATTAGATGCAAAAC--TCAATATTGCAAAC 1548
|||| ||||||| ||||||||||||||||| | | |||||| ||||||||||||||
Sbjct 1524 TTACGTACAATT--CTTCTGCATCGGGTGCAAAAAA--CAAAACAATCAATATTGCAAAC 1579
Query 1549 GAATTAAGATCTTGATGCTAAATCTGAATGTATCAT 1584
|||| |||||||||||||||||||||| ||||||||
Sbjct 1580 GAAT-AAGATCTTGATGCTAAATCTGAGTGTATCAT 1614
> AT3G54250.1 | Symbols: | GHMP kinase family protein | chr3:20082299-20084732
REVERSE LENGTH=1473
Length=1473
Score = 1380 bits (747), Expect = 0.0
Identities = 1096/1260 (87%), Gaps = 41/1260 (3%)
Strand=Plus/Plus
Query 130 ATGGCGGA-GGAGAAATGGGTGGTGATGGTGACGGCACAGACGCCGACGAATATCGCCGT 188
||||| || ||||||||||||| | ||||||||||| || || |||||||| || || ||
Sbjct 45 ATGGC-GACGGAGAAATGGGTGTTCATGGTGACGGCGCAAACTCCGACGAACATTGCGGT 103
Query 189 GATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCATTAACGATAGCATTAG 248
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 104 GATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCGTTAACGATAGCATTAG 163
Query 249 CGTCACGCTTGATCCTGATCACCTCTGTACTCTCACCACCGTCT-CTGTTAGTCCTTCCT 307
||| || |||||||||||||| ||||| || ||||||| || | | ||||||||| | |
Sbjct 164 CGTAACTCTTGATCCTGATCATCTCTGCACAGTCACCACTGT-TGCCGTTAGTCCTGCTT 222
Query 308 TTGATCGAGATCGAATGTGGCTCAATGGCAAGGAAATCTCGCTTTCTGGAAGTAGGTACC 367
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 223 TTGATCGGGATCGAATGTGGCTCAATGGCAAGGAAATATCTCTTTCTGGAAGTAGGTACC 282
Query 368 AGAATTGCTTGAGGGAAATTCGAAGTCGTGCTGATGATGTTGAAGATAAAGAAAAGGGTA 427
| ||||| ||||||||||| ||| ||||||||| |||||||||||| | |||||||| |
Sbjct 283 AAAATTGTTTGAGGGAAATACGAGGTCGTGCTGGTGATGTTGAAGACATGGAAAAGGGGA 342
Query 428 TCAAGATTGAG-AAGAAGGATTGGGAGAAATTGCATCTGCACATTGCTTCTCATAATAAT 486
||||||| || ||||| ||||||||||||||| |||| || |||||||||||||||||
Sbjct 343 TCAAGATA-AGGAAGAAAGATTGGGAGAAATTGAATCTACATATTGCTTCTCATAATAAC 401
Query 487 TTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGTTTTGCTTG-CTTAGTTTTTGC 545
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |
Sbjct 402 TTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGATTTGCTTGTCT-AGTTTTTTC 460
Query 546 TCTTGCCAAGTTGATGAATGTAAATGAAGATCCAAGCCAACTTTCTGCTATAGCAAGGCA 605
|||||| ||||||||||||||| |||||||||||||||| |||||||| ||||| |||||
Sbjct 461 TCTTGCAAAGTTGATGAATGTAGATGAAGATCCAAGCCATCTTTCTGCAATAGCCAGGCA 520
Query 606 AGGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGGGGATTTGTCAAGTGGAACA-TGGGAA 664
||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||||
Sbjct 521 AGGTTCAGGAAGTGCTTGCCGGAGTTTATTTGGTGGATTTGTCAAGTGGA-CAATGGGAA 579
Query 665 ACAAAGAAGATGGGAGTGACAGTGTTGCAGTTCAACTGGTAGATGATAAGCATTGGGATG 724
|||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||
Sbjct 580 GCAAAGAAGATGGAAGTGACAGCGTTGCAGTTCAACTGGCAGATGAGAAGCATTGGGATG 639
Query 725 ATCTTGTTATCATTATTGCTGTGGTTAGTTCACGAG-AGAAGGAAACAAGCAGCACCTCG 783
||||||||||||| ||||||||||| |||||||| | |||||||||| ||||| |||||
Sbjct 640 ATCTTGTTATCATCATTGCTGTGGTGAGTTCACG-GCAGAAGGAAACGAGCAGTACCTCC 698
Query 784 GGAATGCGTGAGAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAAGGAAGTTGTC 843
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 699 GGAATGCGTGAAAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAAAGAAGTTGTG 758
Query 844 CCAGTACGGATTTTGCAAATGGAAGAAGCTATAAAGAATCGAGATTTTACATCTTTTACA 903
||| |||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||
Sbjct 759 CCAAAACGGATTTTGCAAATGGAGGAAGCTATAAAAAATCGAGACTTTGCATCGTTTACA 818
Query 904 AAATTGACGTGTTCAGACAGTAATCAGTTTCATGCTGTTTGTATGGATACATCTCCACCC 963
||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 819 CAATTGACATGTACAGATAGTAATCAGTTTCATGCTGTTTGTCTGGATACATCTCCACCC 878
Query 964 ATATTCTACATGAATGACACCTCCCACAGGATAATCAGCTTAGTTGAAAAGTGGAACCGT 1023
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct 879 ATATTCTACATGAATGACACTTCACACAGAATAATTAGCTTAGTTGAAAAGTGGAACCGT 938
Query 1024 TCTGCCGGTACACCAGAGATTGCTTATACATTTGATGCTGGCCCAAATGCAGTTCTGATT 1083
|||| || |||||| || ||||||| |||||||||||||| |||||||| || ||||||
Sbjct 939 TCTGAAGGGACACCACAGGTTGCTTACACATTTGATGCTGGTCCAAATGCTGTACTGATT 998
Query 1084 GCAAGAAACAGGAAAG-TAGCAGTTGAATTGATGCAGGGGCTGCTCTACTGCTT-CCCTC 1141
||| | ||||| |||| | ||||| ||||| | |||||||| || |||| || ||| |
Sbjct 999 GCACGCAACAG-AAAGGTCGCAGTCCAATTGCTCCAGGGGCTTCTGTACTATTTTCCC-C 1056
Query 1142 CTAAGCCTGACACAGACATGAAGAGTTATGTACTGGGTGATACAT-CGATTGTAAAAGAG 1200
||||| | ||||| || ||||||||||| ||| |||| |||| || | ||| |||||||
Sbjct 1057 CTAAGTCAGACACTGATATGAAGAGTTACGTAGTGGGCGATA-ATTCAATTCTAAAAGAA 1115
Query 1201 GCAGGCTT-G--G-A--A-G-G----AGAG---CT-C--CCACAAG--GAA-TTAAAGAC 1239
||||| || | | | | | | |||| || | || | | ||| ||||||||
Sbjct 1116 GCAGGATTAGATGGAGCAAGTGGTGTAGAGAATCTGCAACCTCCACCTGAAATTAAAGAC 1175
Query 1240 AAGATTGGAAATCAGGATCAAAAAGGTGAAGTGAGTTATTTTATATGCAGC-AGACCTGG 1298
|| |||||| ||||||||||||||| ||||| ||||||||||| |||| | ||||||||
Sbjct 1176 AACATTGGATCTCAGGATCAAAAAGGAGAAGTCAGTTATTTTATCTGCA-CTAGACCTGG 1234
Query 1299 AAGAGGTCCTGTGGTGCTTCAAGACCAAACTCAAGCCCTTCTCCATCCTCAAACTGGCCT 1358
|| |||||| | |||||||| ||||||||||||||||||||| ||||| |||| |||||
Sbjct 1235 AAAAGGTCCCATCGTGCTTCACGACCAAACTCAAGCCCTTCTCGATCCTGAAACAGGCCT 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5