BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482883
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38710.1 | Symbols: | AMMECR1 family | chr2:16184369-161871... 1369 0.0
> AT2G38710.1 | Symbols: | AMMECR1 family | chr2:16184369-16187173
REVERSE LENGTH=907
Length=907
Score = 1369 bits (741), Expect = 0.0
Identities = 854/904 (94%), Gaps = 26/904 (3%)
Strand=Plus/Plus
Query 1 CATCTTCCTCTCTCTCCTGCGCTTTACTTTTTGTTTCTCAGGTTCACATTACTTGCTCAT 60
|||||||||||||||||||||| | ||| | || ||||||||||||||||||||| ||
Sbjct 20 CATCTTCCTCTCTCTCCTGCGC--T--TTTCT-TTACTCAGGTTCACATTACTTGCTGAT 74
Query 61 TTGGA-GGTTTT--TCTGAC-GTTCTGCCTCTTCAAAGCAACGATGGTATCGGCGAACAG 116
||||| |||| |||| | ||| | |||||| ||||||| ||||| |||||||||||
Sbjct 75 TTGGATTTTTTTCATCTG-CGGTT-T-TCTCTTCCAAGCAACAATGGTGTCGGCGAACAG 131
Query 117 AGAAATGGCTGTCTACTGTTTCGACACTTTGGTCTCTCACTACAACAATGAAGAGACTCC 176
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 AGAAATGGCTGTTTACTGTTTCGACACTTTGGTCTCTCACTACAACAATGAAGAGACTCC 191
Query 177 ACCACCTGCCTTTGAAGAGGCCAATCATCCATTGTTTGTTACCTGGAAGAAAATAGTGAA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ACCACCTGCCTTTGAAGAGGCCAATCATCCATTGTTTGTTACCTGGAAGAAAATAGTGAA 251
Query 237 TGGTGGAGAGCCTCGATTGCGTGGATGTATTGGTACACTGGAAGCACGCCGCTTGATCAG 296
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TGGTGGAGAGCCTCGGTTGCGTGGATGTATTGGTACACTGGAAGCACGCCGCTTGATCAG 311
Query 297 TGGCTTCAAGGATTATGCCTTGACTAGTGCCTTAAGGGATCGTAGGTTCCCACCTATACA 356
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 312 TGGCTTCAAGGATTATGCCTTGACAAGTGCCTTGAGGGATCGCAGGTTCCCACCTATACA 371
Query 357 GGCCAAAGAATTGCCATCTCTGCAATGTACTGTGTCTGTCTTGACTGATTATGAAGATGC 416
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 372 GGCCAAAGAATTGCCATCTCTGCAGTGTACGGTGTCTGTCTTGACTGATTATGAAGATGC 431
Query 417 AGAAGATTACCTTGATTGGGAGGTCGGTAAGCATGGTATAATCATTGAGTTTACTGAACC 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 432 AGAAGATTACCTTGATTGGGAGGTTGGTAAGCATGGTATAATCATTGAGTTTACTGAACC 491
Query 477 TGAGACTAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAGGCTG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TGAGACTAATACAAAGCGAAGCGCCACATATTTGCCTGAGGTGCCAGCTCATGAAGGCTG 551
Query 537 GACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAATGGTGTAATAAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GACAAAGATAGAGGCAATCGATTCGCTGGTGCGTAAAGCAGGATACAATGGTGTAATAAC 611
Query 597 AGAAGCAGTGCGTAGGCGAATCAATCTAACGCGTTACCAGAGTACATTATTCAGCATGCA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 AGAAGCAGTGCGTAGGCGAATCAATCTAACGCGTTACCAGAGTACATTATTCAGCATGCA 671
Query 657 TTATAGCGAATACCTTTCATATGTGAAGGCGACAAGGGG--T-GTTGGCCCGGGTATTAA 713
||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||
Sbjct 672 TTATAGCGAATACCTTTCATATGTGAAGGCGACCAGGGGCGTTGTTGGCCCGGTTATTAA 731
Query 714 TGGGATCAACAAGCCCGCCTTTGCCTGATTTGCACCTGCAAATGGATGCCATTGATTATG 773
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TGGGATCAACAAGCACGCCTTTGCCTGATTTGCACCTGCAAATGGATGCCATTGATTATG 791
Query 774 TTTGGCTACCTCCTAATTTATCCTCTATCTATGATTCCAAAATTGTCTGGCTCTCATAAA 833
|||||||||||||||||||||||||| ||| || || ||||||||||||||||
Sbjct 792 TTTGGCTACCTCCTAATTTATCCTCTGTCT-TG-TT--------GTCTGGCTCTCATAAA 841
Query 834 AGAAACGAGACTTCGA-CTTGGCTGTTTCTCAATTGTAACATTAATTAAATCACTTTAAT 892
|||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 842 AGAAACGAGACTTCGAACTTGGCTGTTTCACTATTGTAACATTAATTAAATCACTTTCAT 901
Query 893 CCCT 896
||||
Sbjct 902 CCCT 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5