BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482885
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38730.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 1182 0.0
> AT2G38730.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr2:16192356-16194103 REVERSE
LENGTH=888
Length=888
Score = 1182 bits (640), Expect = 0.0
Identities = 722/762 (95%), Gaps = 3/762 (0%)
Strand=Plus/Plus
Query 1 GAGAGATCAAACGACGATTTGAAGTTCCGATGAATTCCGGAGGAGGAATCGTTGCTGCAG 60
|||||||||| | | |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 37 GAGAGATCAATCAAAGATTTGAAGTTCCGATGAATTCAGGAGGTGGAATCGTTGCTGCAG 96
Query 61 CAGCTCCTTCAAGCGGAGGTGGTAACGTTGAATGGCACGTCCGACCACCGAACCCTAAAA 120
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 97 CAGCTCCTTCAAGCGGCGGTGGTAATGTTGAATGGCATGTCCGACCACCGAACCCTAAAA 156
Query 121 ACCCAGTCGTCTTCTTCGACGTCTCTATTGGTGGCATCCCCGCCGGTCGTATCAAGATGG 180
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 157 ACCCAGTTGTCTTCTTCGACGTCTCTATTGGTGGTATCCCCGCCGGTCGTATCAAGATGG 216
Query 181 AGCTCTTCGCTGACATTGCTCCCAAAACCGCTGAAAACTTCAGGCAGTTCTGTACTGGTG 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 AGCTCTTCGCCGACATTGCTCCCAAAACCGCTGAAAACTTCAGGCAGTTCTGTACTGGTG 276
Query 241 AACACAGAAAAGCTGGAAAGCCTCTTGGTTACAAAGAGTGTCAGTTTCACAGGGTCATCA 300
||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 277 AACTCAGAAAAGCTGGAAAGCCGCTTGGTTACAAAGAATGTCAGTTTCACAGAGTCATCA 336
Query 301 AGGATTTTATGGTTCAAAGTGGTGATTTTCTAAAGAATGATGGTAGTGGATGCGTGTCAA 360
| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 337 AAGATTTTATGGTTCAAAGTGGTGATTTTCTTAAGAATGATGGTAGTGGATGCATGTCAA 396
Query 361 TCTACGGCCACAAGTTTGAGGATGAAAATTTTACTGCCAAACATACTGGGCCAGGATTGC 420
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 397 TCTACGGCCACAAGTTTGAGGATGAGAATTTTACTGCTAAACATACTGGACCAGGATTGC 456
Query 421 TCTCTATGGCAAACAGTGGGCCAAACACAAATGGGTGCCAGTTCTTCATCACTTGTGCAA 480
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TCTCCATGGCAAATAGTGGGCCAAACACAAATGGGTGCCAGTTCTTCATCACTTGTGCAA 516
Query 481 AATGCGACTGGCTTGACAACAAGCATGTTGTCTTTGGGAGAGTGCTTGGGGATGGTTTAT 540
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 517 AATGCGATTGGCTTGACAACAAGCATGTTGTCTTTGGGAGAGTGCTTGGAGATGGTTTGT 576
Query 541 TGGTGATGCGGAAGATTGAGAACGTGGCTATTGGACCCAATAACCGGCCTAAGCTTGCGG 600
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 577 TGGTTATGCGGAAGATTGAGAACGTGGCTATTGGACCCAATAACCGGCCTAAACTTGCGG 636
Query 601 TTGTAATTACAGAGTGTGGGGAGATGTGAAATGTTTTAGAATGTAATGAGAGCCCAAAGC 660
|||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 637 TTGTAATTACTGAGTGTGGGGAGATGTGAAATGTTTTCGAATGTTATGAGAGCCCATAGC 696
Query 661 TTATTAGTTTTAAACTTAGGCATTGTGACAGAAGCCAAATCCCATTGTTGGTTATCAAAA 720
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 697 TTATTAGTTTTAAACTTAGGCATTGTGACAGAAGCCAAATCCCATTGTGGGTTATCTAAA 756
Query 721 ACGTTGTCAACTTTTTACGGTTTACAAATACTACAGTTAAGG 762
| | |||||||| |||||| ||||||||||||||||| |||
Sbjct 757 A--T-GTCAACTTCTTACGGCTTACAAATACTACAGTTGAGG 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5