BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482887
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38750.1 | Symbols: ANNAT4 | annexin 4 | chr2:16196265-16198... 1685 0.0
> AT2G38750.1 | Symbols: ANNAT4 | annexin 4 | chr2:16196265-16198491
REVERSE LENGTH=1337
Length=1337
Score = 1685 bits (912), Expect = 0.0
Identities = 1036/1095 (95%), Gaps = 12/1095 (1%)
Strand=Plus/Plus
Query 4 AACTGCAAGAAAATGGCTCTTCCTCTCGAGTTCGAAAGCCTCACTGAAGCCA--T-A--T 58
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |
Sbjct 49 AACTGCAAGAAAATGGCTCTTCCTCTCGAGCTCGAAAGCCTCACTGAAGCCATCTCAGCT 108
Query 59 --CA-GGG-ATGGGAGTTGATGAGAAGGCATTGATAAGCACATTGGGGAAATCGCAAAAG 114
| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 109 GGGATGGGAATGGGAGTTGATGAGAATGCATTGATAAGCACACTGGGGAAATCGCAAAAG 168
Query 115 GAGCATAGAAAATTGTTTAGGAAAGCAAGCAAAAGTTTCTTTGTGGAAGATGAAGAAAGA 174
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 169 GAACATAGAAAATTGTTTAGGAAAGCAAGCAAAAGTTTCTTTGTTGAAGATGAGGAAAGA 228
Query 175 GCTTTTGAGAAATGCCATGATCACTTCGTCAGACACCTCAAGCTTGAGTTCTCTCGATTC 234
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 229 GCTTTTGAGAAATGTCATGATCACTTCGTCAGACACCTCAAGCTTGAGTTCTCCCGCTTC 288
Query 235 AATAATGCGGTGGTGATGTGGGCGATGCATCCATGGGAGAGAGACGCAAGGTTGGTGAAG 294
|||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 289 AATACTGCGGTGGTGATGTGGGCAATGCATCCATGGGAGAGAGATGCAAGGTTGGTGAAG 348
Query 295 AAAGCATTGAAGAAAGGAGAAGAAGCTTACAACCTCATCGTTGAGGTCTCATGCACACGC 354
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AAAGCTTTGAAGAAAGGAGAAGAAGCTTACAACCTCATCGTTGAGGTCTCATGCACACGC 408
Query 355 TCCGCTGAGGATCTCCTCGGTGCACGCAAAGCTTATCACTCTCTTTTCGACCAATCAATG 414
|| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 409 TCTGCTGAGGATCTCCTCGGTGCACGTAAAGCTTACCACTCTCTCTTCGACCAATCAATG 468
Query 415 GAAGAAGACATTGCCTCTCACGTCCACGGTCCTCATCGCAAGTTGCTTGTGGGGCTCGCG 474
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 469 GAAGAAGACATTGCCTCTCACGTCCACGGTCCTCAGCGCAAGTTGCTTGTGGGGCTCGTG 528
Query 475 AGTGCTTATAGATATGAAGGGAATAAGGTGAAGGATGATTCTACCAAATCGGAGGCTAAG 534
|||||||||||||| ||||| ||||||||||||||||||||| ||||||| || ||||||
Sbjct 529 AGTGCTTATAGATACGAAGGAAATAAGGTGAAGGATGATTCTGCCAAATCCGATGCTAAG 588
Query 535 ATTCTGGCCGAAGCAGTGGCTTCTTCGGGCGAAGAAGTCGTGGAAAAGGATGAGGTTGTT 594
||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 589 ATTCTAGCCGAAGCAGTGGCTTCTTCAGGCGAAGAAGCCGTGGAGAAGGATGAGGTTGTT 648
Query 595 AGGATTTTGACCACAAGAAGCAAACTTCATCTCCAACATCTCTACAAACACTTCAATGAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 649 AGGATTTTGACCACAAGAAGCAAACTTCATCTCCAACATCTCTACAAACACTTTAACGAA 708
Query 655 ATCAAAGGCTCTGATCTTCTTGGGGGTGTATCTCAGTCTTCGCTTCTCAATGAAGCATTG 714
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 709 ATCAAAGGCTCTGATCTTCTTGGGGGTGTATCTAAGTCTTCTCTTCTCAATGAAGCATTG 768
Query 715 CTTTGTTTGCTCAAACCGGCTGTGTATTTCAGCAAGATTTTGGATGCATCTCTGAACAAA 774
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 769 ATTTGTTTGCTCAAACCGGCTCTGTATTTCAGCAAGATTTTGGATGCGTCTCTGAACAAA 828
Query 775 GAAGCAGACAAGACTACCAAGAAATGGTTGACAAGAGTGTTCGTTACAAGAGCAGATCAT 834
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GACGCAGACAAGACTACCAAGAAATGGTTGACAAGAGTGTTCGTTACAAGAGCAGATCAT 888
Query 835 AGTGATGAGATGAATGAGATCAAAGAAGAGTACAATAACCTTTATGGTGAGACTTTGGCT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGTGATGAGATGAATGAGATCAAAGAAGAGTACAATAACCTTTATGGTGAGACTTTGGCT 948
Query 895 CAAAGAATCCAAGAGAAGATTAAAGGGAACTACAGAGATTTCTTTCTCACACTGCTCTCC 954
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 949 CAAAGAATCCAAGAGAAGATAAAAGGGAACTACAGAGATTTCTTGCTCACACTTCTCTCC 1008
Query 955 AAATCCGATTGATTTCGTGTTGAGAAAACTATTACCAAAACTTTTGGTTATTGAAGATTT 1014
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1009 AAATCCGATTGATTTCGTGTTGAGAAACCTATTACCAATACTTTTGGTTATTGAAGATTT 1068
Query 1015 ATCATTTCCCTTTT-ATGGTTTTATATGTTTCTAATTCCAAAATTTGCGTTTTATATACC 1073
|| ||||||||||| |||||||||| |||||||||||| ||||||||||||| | ||||
Sbjct 1069 ATGATTTCCCTTTTTATGGTTTTAT--GTTTCTAATTCCTAAATTTGCGTTTTCTCTACC 1126
Query 1074 ATTTGGTAATAAAGA 1088
||||||||||||||
Sbjct 1127 GTTTGGTAATAAAGA 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5