BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482891
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38790.1 | Symbols: | unknown protein; Has 21 Blast hits to... 1011 0.0
> AT2G38790.1 | Symbols: | unknown protein; Has 21 Blast hits
to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr2:16214189-16215264 REVERSE
LENGTH=1076
Length=1076
Score = 1011 bits (547), Expect = 0.0
Identities = 681/741 (92%), Gaps = 27/741 (4%)
Strand=Plus/Plus
Query 32 CAAAAGATTTGGCCAACTTCTTTCTTTCTGTGGTGATTGCGAATAAGTATGTCTATGGGG 91
|||||||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||
Sbjct 58 CAAAAGATTTGGCCAACTTCTTTCTTGCTGTTGTGATTGTGAA-AATTATGTCTATGGGG 116
Query 92 AAGAAACATCTTAACATCAATTCTCTGAATCACCAATCCACAAAGGACGAAGGCAACAAC 151
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 117 AAGAAACATCTTAACATCAATTCTCAGAATCACCAATCCACAAAGGACGAAGACAACAAT 176
Query 152 TGCAAGAACAGCCTCTTCTTTGGATTGTTTGATGACCCTGAATCTACAAGGTTGAGAAGT 211
||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 177 TGCAAGAACAGTCTCTTCTTTGGATTGTTTGACGACCCTGAATCTAAAAGGTTGAGAAGT 236
Query 212 GGGAGTATGAAGAGACAATACAGCGACATGGGAGATAGCTACCACAGAGTTTATGAAGAA 271
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 237 GGGAGTATGAAGAGACAGTACAGCGACATGGGAGATAGCTACCACAGAGTTTATGACGAA 296
Query 272 CAAAATGATGATGTTG-AT-T-A---TGATGGTGAT-G-G-T---GATGAGGGATCAAGG 319
|||||||||||||||| || | | |||||||||| | | | |||||||||||||||
Sbjct 297 CAAAATGATGATGTTGAATATGATGGTGATGGTGATGGTGATGAGGATGAGGGATCAAGG 356
Query 320 ATGGACATGAAAGT-CTTGATGGTTTTAGAGTATATGAGAGAGCTTTACGTGGGACAACT 378
|||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 357 ATGGACATGAGAGTAC-TGATGGTATTAGAGTATATGAGAGAGCTTTACGTGGGACAACT 415
Query 379 TCAGCTGCTTAAAAAGATGTTTCCAGGTGCAGCTAAAGAAGAGTTTCTTGGTTTCTTCAA 438
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 416 TCAGCTGCTTAAAAAGATGTTTCCAGGTGCAGCTAAAGACGAGTTTCTTGGTTTCTTCAA 475
Query 439 CAAAATCGGAGACGCTGTGTCCCAA-TTCAAACAAGATTCTCGTCCTCATACAAAGTCAA 497
||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 476 CAAAATCGGAGACGCTGTGTCCCAAATT-AAACAAGATTCTCGTCCTCCTACAAAGTCAA 534
Query 498 TGACTATGCAGAGGAGTCTTAGTGCTGGTTCGCCACGTTTCACTTCGAAAGGGGTTAATT 557
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TGACTATGCGGAGGAGTCTCAGTGCTGGTTCGCCACGTTTCACTTCGAAAGGGGTTAATT 594
Query 558 TGGGTCCATCAGATCTAAAAAATGATAGGTTTAAAGTTACAACGGTCAATGCTGGTGGAG 617
|||||||||||||||||| | |||| |||||||||||||||| ||| |||||||||||||
Sbjct 595 TGGGTCCATCAGATCTAAGACATGAAAGGTTTAAAGTTACAATGGTTAATGCTGGTGGAG 654
Query 618 CCGGCGGAGCTGGTAGTTCTGCGGGAGGAGGTAAAGGTGGCTCAGCGGCCGGTCAGGGAC 677
| | | |||| | ||||||||||||||||||||||||| || || |||||||| |
Sbjct 655 CTG-C-----TGGT--T-CTGCGGGAGGAGGTAAAGGTGGCTCGGCAGCTGGTCAGGGTC 705
Query 678 AGACCAAGAAGTAGTTTGGATTTGTGACATGTGGTGTGGCCATGGATGATCAAATCTTAT 737
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AGACCAAGAAGTAGTCAAGATTTGTGACATGTGGTGTGGCCATGGATGATCAAATCTTAT 765
Query 738 GAGAC-TCAGGGTTTAGCATT 757
|| | |||||||||||||||
Sbjct 766 GACTCCTCAGGGTTTAGCATT 786
Score = 161 bits (87), Expect = 9e-39
Identities = 112/124 (90%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 816 TTTCCTAGTTGGGG-TTGTTTTGTGTTTTAGGATTTATAGAGATGAAGTATTACTCTCAT 874
|||||||| ||||| ||||||| |||||||| || |||||||||||||||| | |||||
Sbjct 904 TTTCCTAG-TGGGGTTTGTTTTATGTTTTAGTATCTATAGAGATGAAGTATCAGACTCAT 962
Query 875 CCAAAGGTAGAAGAAACTAGGATCAACTAGCTTTGTTTATATATTCTCTTTAGTGATTGT 934
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 963 CCAAAGGTAGAAGAAACTAGGATCAACTAGCTTTGTTTATTTATTCTCTTTGGTGTTTGA 1022
Query 935 TTCT 938
||||
Sbjct 1023 TTCT 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47370800621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5