BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482892
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38800.1 | Symbols: | Plant calmodulin-binding protein-rela... 2737 0.0
> AT2G38800.1 | Symbols: | Plant calmodulin-binding protein-related
| chr2:16216999-16219159 FORWARD LENGTH=2078
Length=2078
Score = 2737 bits (1482), Expect = 0.0
Identities = 1848/2014 (92%), Gaps = 68/2014 (3%)
Strand=Plus/Plus
Query 1 ATGGTTCAGA-G--GAAGACTTGTCTAACAATCGAGTCTTCTTCCAATCTCCAACCTGAA 57
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTCAGAGGAAGAAGACTTGTCTAACAATCGAGTCTTCTTCCAATCTCCAACCTGAA 60
Query 58 ACTCGATTCGGACAAGAACATCTCAAGAACCTTGGACCAGAGATGATGATGATGAAGAGA 117
||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 ACTCGGTTTGGGCAAGAACATCTCAAGAATCTTGGACCAGAGATGATGATGATGAAGAGA 120
Query 118 ACTAAACCTAGAAGGAAGCTTAAAGACAATCATGTTTCTTCTCAATCAGGTAAGTCACAA 177
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTAAACCTAGGAGGAAGCTTAAAGACAATCATGTTTCTTCTCAATCAGGTAAGTCACAA 180
Query 178 GAACTACCAAAGCATGATCTTGTTGTTAAAGTGATAGGTGGTTCACCTAATTACATGAAA 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAACTACCAAAGCATGACCTTGTTGTTAAAGTGATAGGTGGTTCACCTAATTACATGAAA 240
Query 238 GGCACTAGTAGTTCTGAGGCAAGAAAGGAGAACAAGAAAAGACTTAATCTTTCAAGGAAT 297
||||| ||||||||||||||||| |||||||||||||||| | |||||||||| ||||||
Sbjct 241 GGCACCAGTAGTTCTGAGGCAAGGAAGGAGAACAAGAAAAAATTTAATCTTTCTAGGAAT 300
Query 298 CAGAAGAACCAAGCTGG-TCTAAAACATGATTCTCGTTATGGAGTTAACAAGGAGAGAAG 356
|||||||||||| | || || ||||||||||||||||||||||||||||||||| |||||
Sbjct 301 CAGAAGAACCAAACCGGTTC-AAAACATGATTCTCGTTATGGAGTTAACAAGGAAAGAAG 359
Query 357 TTATAACAAGCCGAGTTCTAGGATCGGTAGGGGTTTGACAAAGGCTCCGAGTTTCAAGAG 416
|| ||||||| ||||||| |||| |||||| ||||||||||||||||||| |||||||||
Sbjct 360 TTGTAACAAGTCGAGTTCGAGGAACGGTAGAGGTTTGACAAAGGCTCCGATTTTCAAGAG 419
Query 417 ATGTTCACAGAGAGCTACTTGTTCTTCAACTCTAAAAGATTCCAAGTTTCCAAAGTATTT 476
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 420 ATGTTCACAGAGAGCTACTTGTTCTTCAACTCTAAAAGATTCCAAGTTTCCAGAGTATTT 479
Query 477 GATGCTTAACCATGGCGAGACTTTTGATCAAGTTAATGGAACCTCTGTCTTGAAAGTCTG 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 GATGCTTAACCATGGCGAGACTTTTGACCAAGTTAATGGAACCTCTGTCTTGAAAGTCTG 539
Query 537 TCCTTACACGTATTGTTCACTCAACGGTCATCTTCACT-CCGTGCAGTATCCTCCTCTGA 595
|||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||
Sbjct 540 TCCTTACACGTATTGTTCACTCAACGGTCATCTTCA-TGCAGCGCAGTATCCTCCTCTGA 598
Query 596 AAAGCTTTATATCCTCGAGGAGGCAGAGTTTGAAGTCCCAGAAGAGTGTGAAAATGGAAG 655
||||||| ||||| | |||||| |||||||||||||| || |||||||||||||||||||
Sbjct 599 AAAGCTTCATATCGTTGAGGAGACAGAGTTTGAAGTCACAAAAGAGTGTGAAAATGGAAG 658
Query 656 CTTATAAGGAAGAGTATGTTAAGATGGAT-AT-T-GAGGAGAAGAAAGAGTTTGAGGAT- 711
||| | ||||||||| ||| ||||||||| || | ||||||||||||||||||||| ||
Sbjct 659 CTTCTGAGGAAGAGTTTGTGAAGATGGATGATCTAGAGGAGAAGAAAGAGTTTGAGAATG 718
Query 712 GTAAATGGAGGTGCTTGTGAGGTTGATATTGATAGTCAAATCTCGGAAACTGTTTCTGAA 771
|| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 719 GT-AATGGAGGTTCTTGTGAGGTTGATATTGATAGTCAAATATCGGAAACTGTTTCTGAA 777
Query 772 GGAGCACCTCATTCTGAAACTGATTCTGATGATTACTCTGATAGTGCTGAGATGGTGAGT 831
|||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 GGAGCACCTCGTTCTGAAACTGATTCTGATGATTACTCTGATAGTGC--------TGAG- 828
Query 832 TTATCAGAAGGTGATCATGACATTGAGTTAAAAGAATCTGGTTTGGAGGAGACTTTGGTA 891
|| | | || |||||||||||||||||| |||||||||||||||||||
Sbjct 829 --AT------G-G----TG--ATTGAGTTAAAAGAATCTTGTTTGGAGGAGACTTTGGTG 873
Query 892 GATGACTCTGTGAATGAGGTACAAGAGAAA-CTAAACAGAGATGGAGATA-CTGATCTTT 949
|||||||||| ||||||||| ||||||||| | ||||||||||||||||| || | || |
Sbjct 874 GATGACTCTGAGAATGAGGTCCAAGAGAAAGC-AAACAGAGATGGAGATACCT-ACCTAT 931
Query 950 TAAAAGAATCTGATTTGGAGGAGACTTTGGTAGAGGACTCAATGAATGAGATTCAAGATG 1009
||||||||||||| ||||||||||||||||| ||||| || | |||| | ||||||||
Sbjct 932 TAAAAGAATCTGACTTGGAGGAGACTTTGGTTGAGGATTC--T--ATGA-A-TCAAGATG 985
Query 1010 AAGGAAACAGAGATGGAGATTCTGATCACTCTGGTTGCTTTGATTCTGAAGTTATCGGTA 1069
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 986 AAGGAAACAGAGATGGAGATGCTGATCACTCTGGTTGCTTTGATTCTGAAGTTATTGGTA 1045
Query 1070 TAATCAAGAACTCAGAAGCAGATAATGCAATGGAGGAGACTTTGGTAGATGACTCTGTGA 1129
|||||||||||||||||||||||| || || || ||||||||| |||||||||||||||
Sbjct 1046 TAATCAAGAACTCAGAAGCAGATATTGTTATTGATGAGACTTTGATAGATGACTCTGTGA 1105
Query 1130 AAGATCTCGAAGAGACAGCAAACATAGATGGGGATGCTAATCTATTTGGTTGCTTTAATT 1189
||||| ||||||| ||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1106 AAGATTTCGAAGATACAACAAACATATATGGGGATGCTAATGAATTTGGTTGCTTTAATT 1165
Query 1190 CTGAAGTTATCGATATGATGAAGAACAAAGAAGCAGATAATGCAATCGAGGAGACTTTGG 1249
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1166 CTGAAGTTATCGATATGATGAAGAACACAGAAGCAGATACTGCAATCGGGGAGACTTTGG 1225
Query 1250 TAGATGACTCTATGAAAGAGATCCAAGAGAAAGAAAACAAAGATGAAGATGCTGATGAAT 1309
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1226 TAGATGAGTCTATGAAAGAGATCCAGGAGAAAGAAAACAAAGATGAAGATGCTGATGAAT 1285
Query 1310 CTAGTTGCTTTGTTTCAGAAGTTATTGATATGATAAAGAACTCAGCTGCAGGTGATGCTA 1369
|||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 1286 CTAGTTGCTTTGTTTCAGAACTTATCGATATGATAAAGAACTCAGCTGCAAGTGATGCTA 1345
Query 1370 TTGAGGATAAAGATGCTGCTGGTGAAGAGACACTAAAGGATAAAGCTGAAGACTGCAAAG 1429
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1346 TTGAGGATAAAGATGCTACTGGTGAAGAGACACTAAAGGATAAAGCTGAAGATTGCAAAG 1405
Query 1430 AGGAGTTTCAAGACCAGACTGAAGTTATATTGATGACAGAAGAAAAGGCAAAGGTTCCAT 1489
||| || | ||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1406 AGGTGTCTAAAGGCCAGACTGAAGTTATATTGATGACAGAAGAAAATGCAAAGGTTCCAT 1465
Query 1490 TTAACCGTACACGAAAACCCTGCAACCAAGAAGAGCCAGACTCTAGCATTTCATGGACTA 1549
||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||
Sbjct 1466 TTAACCGTACACGAAAACCCTGCAAACAAGAAGAGTCAGGCTCTACCATTTCATGGACTA 1525
Query 1550 TCATCAAATGCAAGAAACCCGTTGCAGAGACCGAGGATTTAAGAGCATTCAACCCAAGAG 1609
||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1526 TCATCAAATGCAAGAAACCCGTTGCAGAGACCGAGGATTTAAGAGAATTTAATCCAAGAG 1585
Query 1610 AACCCAATTACCTTCCAGTTGTAGTGGAGGAGGATGCTGAAAAGGTGGACCTCAAGCATC 1669
|||| ||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||
Sbjct 1586 AACCAAATTACCTTCCAGCTGTAATGGATGAGGATGCTGAAAAAGTGGACCTCAAGCATC 1645
Query 1670 AAGACATAGATGAGAGGAGAAAGTCAGAGGATTGGATGTTTGATTATGCTTTGCAGCGTG 1729
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1646 AAGACATAGATGAGAGGAGAAATTCAGAGGATTGGATGTTTGATTATGCTCTGCAGCGTG 1705
Query 1730 CTGTTAGCAAACTTGCCCCAGCAAGGAAGAGGAAAGTTGCATTACTCGTCGAGGCATTTG 1789
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1706 CTGTTAGCAAACTTGCCCCAGCAAGGAAGAGGAAAGTTGCATTACTCGTAGAGGCATTTG 1765
Query 1790 AAACCGTGCAACCACATGGTAGAGAACCT-ACACAGGTTTTAAGTTATGGAAGACACCTT 1848
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1766 AAACCGTGCAACCACATGGTAGAGAACCTGA-ACAGGTTTTAAGTTATGGAAGACACCTT 1824
Query 1849 CAAGCCTGCAATTAATATAAAGGTGAAGGTCCAGGGATGATCCAAGAAAGGCAACT---G 1905
||||||||||||||| | ||||||||||||||||||||| ||| ||||| |
Sbjct 1825 CAAGCCTGCAATTAAC-----G---AAGGTCCAGGGATGATCCAAGGAAGCCAACTAAAG 1876
Query 1906 -AA-G--GA---A--TTTATTTATTTACTTACAAGAATCAAACCCAAGTGTAAACTTTGA 1956
|| | || | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 GAAAGATGAGTGACCTTTGTTTATTTACTTACAAGAATCAAACCCAAGTGTAAACTTTGA 1936
Query 1957 TGGTTTATTTCATAGCTCTTTGTGTGGTAGTTAT 1990
||||||||||| ||| ||||||||||||| ||||
Sbjct 1937 TGGTTTATTTCCTAGTTCTTTGTGTGGTATTTAT 1970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103212320520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5