BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482894

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38810.1 | Symbols: HTA8 | histone H2A 8 | chr2:16219285-162...   669    0.0  


> AT2G38810.1 | Symbols: HTA8 | histone H2A 8 | chr2:16219285-16220882 
REVERSE LENGTH=688
Length=688

 Score =  669 bits (362),  Expect = 0.0
 Identities = 415/440 (94%), Gaps = 5/440 (1%)
 Strand=Plus/Plus

Query  20   ATATGGCTGGTAAAGGCGGGAAAGGACTTATAGCTGCGAAGACGAC-G--GCAGCTGCTA  76
            |||||||||||||||| |||||||| ||| |||||||||||||||| |  |||||||| |
Sbjct  117  ATATGGCTGGTAAAGGTGGGAAAGGGCTTCTAGCTGCGAAGACGACGGCAGCAGCTGCAA  176

Query  77   ACAAAGACAGTGGTAAGAAGAAATCCATCTCTCGCTCTTCTCGCGCCGGTATTCAGTTTC  136
            |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  177  ACAAAGACAGTGTTAAGAAGAAATCCATCTCTCGCTCTTCTCGTGCTGGTATTCAGTTTC  236

Query  137  CAGTCGGTCGTATTCATCGTCAACTCAAGCAAAGAGTTTCAGCACATGGAAGAGTTGGTG  196
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  CAGTGGGTCGTATTCATCGTCAACTCAAGCAAAGAGTTTCAGCACATGGAAGAGTTGGTG  296

Query  197  CCACTGCTGCTGTCTACACTGCATCAATTCTAGAATACTTAACTGCTGAAGTTCTCGAGT  256
            ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  297  CCACTGCTGCTGTTTACACTGCATCAATTCTAGAATACTTGACTGCTGAAGTACTCGAGT  356

Query  257  TAGCTGGAAATGCAAGCAAGGATCTGAAAGTGAAGAGAATAACACCAAGGCATTTGCAGC  316
            ||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct  357  TAGCTGGAAATGCGAGCAAGGATCTCAAAGTGAAGAGAATTACACCAAGACATTTGCAGC  416

Query  317  TTGCAATCAGAGGAGATGAGGAGCTTGACACTCTCATTAAAGGAACAATTGCAGGAGGAG  376
            |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct  417  TTGCAATCAGAGGAGATGAGGAACTTGACACTCTCATCAAAGGAACCATTGCAGGAGGAG  476

Query  377  GTGTGATCCCTCACATCCACAAGTCCCTTGTCAACAAAGTCACCAAGGATTGAGTATCTG  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct  477  GTGTGATCCCTCACATCCACAAGTCCCTTGTCAACAAAGTCACCAAGGATTGAGTTTC-G  535

Query  437  -TCTCCGAGTCCTAAGTCTC  455
             |||| ||||||||||||||
Sbjct  536  CTCTCTGAGTCCTAAGTCTC  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21665399819


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5