BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482896
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38820.2 | Symbols: | Protein of unknown function (DUF506) ... 1027 0.0
> AT2G38820.2 | Symbols: | Protein of unknown function (DUF506)
| chr2:16221836-16223662 FORWARD LENGTH=1637
Length=1637
Score = 1027 bits (556), Expect = 0.0
Identities = 714/784 (91%), Gaps = 35/784 (4%)
Strand=Plus/Plus
Query 28 AAATGATGAAATCGACGGCGAGATTTGCGTCTGATTGTCGTTATAATGATCACAAAAGAA 87
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 129 AAATGATGAAATCGACGGCGAGATTTGCGTCTGATTGTCGTTATAATGATCACAAAAGCA 188
Query 88 TAAAAGCGTGACGTTTCCGCGTCTTCGCGTATCTCGGAAACTTTAATCCGTATCTAAAGA 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TAAAAGCGTGACGTTTCCGCGTCTTCGCGTATCTCGGAAACTTTAATCCGTATCTAAAGA 248
Query 148 GCTAAATTTAAAGCGAtctttctctttttctttttata-t-ttttttttCC-TGAGGCTT 204
||||||||| |||||||||||||||||||||||| ||| | |||||||||| ||| ||||
Sbjct 249 GCTAAATTTGAAGCGATCTTTCTCTTTTTCTTTTAATATTGTTTTTTTTCCTTGAAGCTT 308
Query 205 GCCCAGTTTCGAAGTTATTCCATGCTTTATCTTCAATTTTAGATCATAGTTTTCGACAAA 264
||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 309 GCCTAGTTTCGAAGTTATTCCATGTTTTATCTTCAATTCTAGATCATAGTTTTTG----G 364
Query 265 AATATTTGGAGATTAGGTTTTAG-tttttttGTTCAGCTTGATCTGGATTTGGCGATTTG 323
|| | | ||||||||||| |||||||||| |||| |||||||||||| |||||||
Sbjct 365 AA-A--T-----TTAGGTTTTAGTTTTTTTTGTTAAGCTCGATCTGGATTTGCCGATTTG 416
Query 324 AATTTTTGAGTAAA-CGCAATGCCATTTCATATGAAAATCCAACCGATCGACGATTCCGA 382
|| ||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 417 AAATTTTGAGTAAATCGCAATGCCATTACATATGAAAATCCAACCGATCGACGAATCCGA 476
Query 383 TGTATCGGAAGAGGTACCTTTCCCGGAGACGATGAGACAAATGCCGAAATCGAGGCTGAA 442
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 477 TGTATCGGAAGAGGTACCTTACCCGGAGACGATGAGACAGATGCCGAAATCGAGGCTGAA 536
Query 443 ACGTCTCTTTGAGCGTCAGTTCATTAATAAGAACGTTTCGGAGAAATTTTCCGGCTCAGA 502
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 537 GCGTCTCTTTGAGCGTCAGTTCACTAATAAGAACGTTTCGGAGAAATTTACCGGCTCAGA 596
Query 503 TGTTGAGGCACCGCTTTCGAGAGGTAACTCTGGAGATTTTGAGCCGAGCTCGGTTTGTTT 562
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 597 TGTTGAGGCACCGCTTTCGAGAGGTAACTCTGGAGATTTTGAGCCGAGCTCTGTTTGTTT 656
Query 563 GGCGAAGATGGTTGTAAATTTCATGGAGGATAACAACGGCGGCGATAAACAGCGGTGTGG 622
||| ||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 657 GGCCAAGATGGTTCTAAATTTTATGGAGGACAACAACGGCGGCGAGAAACAGCGGTGTGG 716
Query 623 CCGTAGCCGATGTAATTGCTTTAGCGGGAGTGGTACAGAGAGCTCTGACGATGAAACTGA 682
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 717 ACGTAGCCGATGTAACTGTTTTAGCGGGAGTGGTACAGAGAGCTCTGATGATGAAACTGA 776
Query 683 ATGGTCTGATGGTTTCAAATGTTCTTCTGGTGAAGCTTTTGAGATCCTCAAGAGTTTGGT 742
||| | | | | | || |||||||||| |||||||||||||||||||||
Sbjct 777 ATG-T-T--------C---T-T-CT---GGTGAAGCTTGTGAGATCCTCAAGAGTTTGGT 818
Query 743 TCTCTGTAAGAGCATCCGTGAGAGGAATTTGCTGACCGATGTGACCAAGATTGTTGAAAC 802
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 819 TCTCTGTAAGAGCATCCGTGTGAGGAATTTGCTGACTGATGTGACCAAGATTGCGGAAAC 878
Query 803 AAGT 806
||||
Sbjct 879 AAGT 882
Score = 902 bits (488), Expect = 0.0
Identities = 588/634 (93%), Gaps = 15/634 (2%)
Strand=Plus/Plus
Query 805 GTTATGATGCGGCTCTATGCAAATCTCGCTGGGAGAAATCGCCTTCTTGTCCTTCTGGGG 864
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 947 GTTATGATGCGGCTCTATGCAAATCTCGCTGGGAGAAATCTCCTTCTTGTCCTGCTGGGG 1006
Query 865 AATATGAGTATGTGGATGTGATAATGAAAGGTGAAAGACTGTTGATCGACATAGATTTCA 924
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1007 AATATGAGTATGTGGATGTGATAATGAAAGGTGAAAGACTGTTAATCGACATAGATTTCA 1066
Query 925 AATCGAAGTTCGAGATTGCTCGTGCAACAAAGACATACAAGTCGATGCTACAAACTCTGC 984
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1067 AATCGAAGTTCGAGATTGCTCGTGCAACAAAAACGTATAAGTCGATGCTACAAACTCTGC 1126
Query 985 CTTACATCTTTGTGGGGAAAGCGGATAGGCTACAGAGGATCATCATCCTTATATGTAAAG 1044
||||||| ||||||||||||||||||||||| |||| ||||||| | || ||||||||||
Sbjct 1127 CTTACATATTTGTGGGGAAAGCGGATAGGCTGCAGAAGATCATCGTTCTAATATGTAAAG 1186
Query 1045 CGGCAAAGCAGAGCTTGAAGAAGAAAGGACTTCATGTGCCGCCATGGAGGAGAGCTGAGT 1104
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1187 CGGCAAAGCAGAGCTTAAAGAAGAAAGGACTTCATGTACCGCCATGGAGGAGAGCTGAGT 1246
Query 1105 ATGTGAAATCCAAGTGGCTGTCTTCTCATGTACGTGCAGATCAAAACTCAAATG-AGAAA 1163
||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||
Sbjct 1247 ATGTGAAATCCAAGTGGCTGTCTTCTCATGTTCGTGTAGACCAAAACTCAAATGGAGAA- 1305
Query 1164 GAT-AAGCAAGAATCAGTAGATATGATCACTGAATCGGTCGGTTCCATAGTCTTCGGTGT 1222
| | ||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||
Sbjct 1306 G-TCAAGCAGGAATCAGTAGAGGTGATCGCTGAGTCGGTCAGTTCCATAGTCTTCGGTGT 1364
Query 1223 CTGAAGGTTTATATATATGGCATAACCTTCTAGAGAGGTGTGAGATATAGGAGTATTCGA 1282
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1365 CTGAAGGTTTATATATATGGCATAACCTTCAAGAGAGGTGTGAGATATAGGAGTATTCGA 1424
Query 1283 ATCCCTTAATAGTTTTTGATATCAAGGGTATGTTTACAGGATCCATGCACGCGTAAAAGT 1342
||||||||| |||||||||||| ||||||||||| |||||||||||||| |||| ||||
Sbjct 1425 ATCCCTTAA-AGTTTTTGATATTAAGGGTATGTT-ACAGGATCCATGCATACGTAGAAGT 1482
Query 1343 GGCTC-CCCTTTTGTCttttttttttttGGGTGTAAGGGAGAGTGTGATCCAACTCTATG 1401
| ||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1483 GTCTCTCCCTT--GTCTTTTTTTT----GGGTGTAAGGGAGAGTGTGATCCCACTCTATG 1536
Query 1402 GTTGTTTCTCTAT--GAGGATTAATAGTATTTTA 1433
|||||| |||||| |||||||||||||||||||
Sbjct 1537 GTTGTTGCTCTATATGAGGATTAATAGTATTTTA 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5