BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482897

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38823.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  1286    0.0  


> AT2G38823.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G54520.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr2:16224072-16225296 FORWARD LENGTH=861
Length=861

 Score = 1286 bits (696),  Expect = 0.0
 Identities = 790/836 (94%), Gaps = 4/836 (0%)
 Strand=Plus/Plus

Query  1    AAAAAGGCTATGGATTATCCCCAAGGCATCAACAAAGTCTCCACTTCTGTTATTGATAAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  25   AAAAAGGCTATGGATTATCCCCAAGGCATCAACAAAGTCTCCACTTCTGTTATTGATTAT  84

Query  61   GACAACAAAC-TGAAGAAACATAACTTAGAAGCTGAGAAGCGACTCAAAAAAGTGGAACA  119
            |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  85   GACAAC-AACTTGAAGAAACATAACTTAGAAGCTGAGAAGCGACTCAAAAAGGTGGAACA  143

Query  120  AGATTATCTTCACATAAGCCAAAAGTACACAGAAACAAGATCACAGTGGTGGAGCTTAAA  179
            ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  144  AGATTATCTACACACAAGTCAAAAGTACACAGAAACAAGATCACAGTGGTGGAGCTTAAA  203

Query  180  TGATGAGAGATACCGCGCTGTCAGTAGCTGTCACTCTGCTGCAAACCTCATTAACCGCTG  239
            ||||||||||||||||||||||| ||||||| |||  ||||||||| |||||||||||||
Sbjct  204  TGATGAGAGATACCGCGCTGTCAATAGCTGTTACTGGGCTGCAAACTTCATTAACCGCTG  263

Query  240  CAACAAGCTGGTAGAGAAATTGCAGAATGCTCTTGACAAGCTACTTAAAGGAGAAACAAC  299
            |||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||
Sbjct  264  CAACAAGCTGGTAGAGCAATTGCAGAAGGCTCTTGACAAGCTACCTAAAGGAGAAACAAC  323

Query  300  AGAAGAAACCATTGATCATAACCTGCAATTCTCGTTACTTCAGCAGAAAGCACAATTTCA  359
             ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct  324  CGAAGAAACCATTGATCATAGCCTGCAGTTCTCGTTACTCCAGCAGAAAGCACAATTTCA  383

Query  360  AGAGCTAGAGTATCATGGAAAATATGAATTCAGAGAATTTAGCAGAGAGCTAGACTGCAT  419
            ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct  384  AGAGCTAGACTATCATGGAAAATGCGAATTCAGAGAATTTAGCAGAGAGCTAGACTGCAT  443

Query  420  TCGGaaaaaaaTGCCTAGAAGTGACCGCAGAAAAGCTGTACATGATCTCCTAAAAGATGT  479
            |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  444  TCGGAAAAAAATGCCTAGGAGTGACCGCAGAAAAGCTGCACATGATCTCCTAAAAGATGT  503

Query  480  TTGTAACCCCACAAGTCATGACAGTTTGAGAAAATCTGTGGAGCTGGAAATAAAAG-TTC  538
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  504  TTGTAACCCCACTAGTCATGACAGTTTGAGAAAATCTGTGGAGCTGGAAATAAAAGCTT-  562

Query  539  TGAAGAAGCTGATCAGAGCGCTTCAAAAAGACTGGGAAGAAAAACTACATATAAAGCAAA  598
            |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| 
Sbjct  563  TGAAGAAGCTGATCAGAGAGCTTCAAAAAGACTGGGAAGAAAAACAACATGTAAAGCAAT  622

Query  599  ATGCAAAGAATATATATACAGATTTTAAACAAAAGGTGAAGCATCTAGAGAAGAAAAAGG  658
            || ||||||||| ||||| |||| |  |||||||||||||||||||||||||||||||||
Sbjct  623  ATACAAAGAATAAATATAAAGATCTCGAACAAAAGGTGAAGCATCTAGAGAAGAAAAAGG  682

Query  659  AACAACTTGCGAGACAGCGGGACGAAGAAAGAAAAATCATGCTCGGGACGAAGAAAACGC  718
            ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  683  AACAACTTGCGGGACTGCGGGACGAAGAAAGAAAAATCATGTTCGGGACGAAGAAAACGC  742

Query  719  ATGATAGGAAGATAGGTACATATCCTGAGGCTTATTATATCAAGATGTTGAATGATAATT  778
            |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct  743  ATGATAGGAAGATAGGTACATACCCTGAGGCTTATTATATCAAAATGTTGAATGATAAAT  802

Query  779  TACCATGATGGGTTGTAATGAATTATTTTGGGGATTGATCAAAGCATTTATGTTCC  834
            |||||||||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct  803  TACCATGATGAGTTGTAATGAATTAATTTGGGGATTGATCAAAGCATTAATGTTCC  858



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40639424923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5