BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482899
Length=2360
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38840.1 | Symbols: | Guanylate-binding family protein | ch... 2366 0.0
> AT2G38840.1 | Symbols: | Guanylate-binding family protein |
chr2:16227051-16232456 FORWARD LENGTH=2428
Length=2428
Score = 2366 bits (1281), Expect = 0.0
Identities = 1408/1469 (96%), Gaps = 10/1469 (1%)
Strand=Plus/Plus
Query 895 CAGGTTAACCAGATTCGGGATTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGC 954
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 966 CAGGTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGC 1025
Query 955 TTACCACAGCCTCATCTCATGCGGACGAAGCTGTGTGATCTGAAGGATGAGGACCTGGAC 1014
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1026 TTACCGCAGCCTCATCTCATGCGTACGAAGCTGTGTGATCTGAAGGATGAGGACCTGGAT 1085
Query 1015 TCTACCTATGTTGCAAGGCGTGACCAATTGAAAAAGCTCGTTGCTAGTATTATCCACCCA 1074
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1086 TCTACATATGTTGCAAGGCGTGACCAATTGAAAAAGCTCGTTGCTAGTATTATCCGCCCA 1145
Query 1075 AAGATAGTGCAGGGGAAGACACTAAATGGGAAGGAATTTATTTCTTTCCTGGAACAGATA 1134
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1146 AAGATAGTGCAGGGGAAAACACTAAACGGGAAGGAATTTATTTCTTTCCTGGAACAGATA 1205
Query 1135 TTGGATGCGTTGAATAAAGGAGAGATCCCATCCACAGGATCACTAGTTGAGGTTTTCAAC 1194
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1206 TTGGATGCGTTAAATAAAGGAGAGATCCCATCAACAGGATCACTAGTTGAGGTTTTCAAT 1265
Query 1195 AAAGATATTGTTGAGCGATGTGTTAAGCTGTACAATGAGAGGATGGTAGGATTGAGGCTA 1254
||||||||||||||| ||||||| |||||||||||||||| ||||||| || || | |||
Sbjct 1266 AAAGATATTGTTGAGAGATGTGTGAAGCTGTACAATGAGAAGATGGTAAGAGTGCGACTA 1325
Query 1255 CCTATGTCTGAAGAATCTCTCCAAAGTTCCCATGAAACGGCACATAATGAAGCTATTAAA 1314
|||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||| |||
Sbjct 1326 CCTATGTCCGAAGAATCTCTCCAAAGTGCCCATGAAATGGCGCATAATGAAGCTATCAAA 1385
Query 1315 GCATTTGATGCACAGCATTTTGGCAGACAGCATGCAAAGAAATCTGTCGATCAGTTGGAT 1374
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1386 GCATTTGATGCACAACATTTTGGCAGACAACATGCAAAGAAATCTGTCGATCAGTTGGAT 1445
Query 1375 GAACAAATGCAGGAGGTATATAAGAATTTTGTTCTTGCAAATGAATACCAATCGTCGAAG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GAACAAATGCAGGAGGTATATAAGAATTTTGTTCTTGCAAATGAATACCAATCGTCGAAG 1505
Query 1435 CTCTGTGAGGCGCTATATACAAGTTGTGAAGATGACATGGACCACTTACAGGCTCTCCGA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 CTCTGTGAGGCGCTATATACAAGTTGTGAAGATGACATGGACCACTTACAGGCTCTCCGA 1565
Query 1495 CTCCCTTCCATGGCTAAATTTAATGCAGGTTTCGTGTACTGCAACAAAACTTTTGAGCAG 1554
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1566 CTCCCTTCCATGGCTAAATTTAATGCAGGTTTTGTGTACTGCAACAAAACGTTTGAGCAG 1625
Query 1555 CAATGTGTTGGTCCTTCAAAACAAAACTATGAGCAAAGATTAACTAAGATGATGGGAAAG 1614
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1626 CAATGTGTTGGTCCTTCAAAACAAAATTATGAGCAAAGATTAACTAAGATGATGGGAAAG 1685
Query 1615 TCACGGTCTTTGTTCATCAAAGAATACAATAACCGACTGTTCAACTGGCTGGTTGGGTTC 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 TCACGGTCTTTGTTCATCAAAGAATACAATAACCGACTGTTCAACTGGCTGGTTGGGTTC 1745
Query 1675 TCTCTTGTAATGGTGGTTGTGGGCCGGTTTATTATAAAATTCATTTTATTAGAAATGGCG 1734
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1746 TCTCTTGTAATGGTGGTTGTGGGCCGGTTTATCATAAAATTCATTTTATTAGAAATGGCG 1805
Query 1735 GCGTGGATACTTTTCATATTCTTGGAGACATACACAAGGATGTTCTGGACAGCAGAGGCT 1794
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1806 GCGTGGATACTTTTCATATTCTTGGAGACATACACAAGGATGTTCTGGACAGCAGAAGCT 1865
Query 1795 CTGTATTACAACCCAGTCTGGCATTTCATCGTTGGAACATGGGAAAATGTCGTGTATAGT 1854
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1866 CTTTATTACAACCCAGTCTGGCATTTCATCGTTGGGACATGGGAAAATGTCGTGTATAGT 1925
Query 1855 CCCGTTCTCGACTTGGACAGATGGGCGATTCCTATAGTCTGCATAATTGCACTTTGTGTG 1914
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 CCTGTTCTCGACTTGGACAGATGGGCGATTCCTATAGTCTGCATAATTGCACTTTGTGTG 1985
Query 1915 CTTTATTGGCGGTGTTATGGAAAGAGGAAACACGGGGCTCGCTGGCTTCTTCCGCTGTAC 1974
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 CTATATTGGCGGTGTTATGGAAAGAGGAAACACGGGGCTCGCTGGCTTCTTCCGCTGTAC 2045
Query 1975 AACAACCAGAAGAATGGCCGGAATAGGGAACGGTCTGAGTAAAAACATGTTCCTCCTCAT 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2046 AACAACCAGAAGAATGGCCGGAATAGGGAACGGTCTGAGTAAAAACATGTTCCTCGTCGT 2105
Query 2035 TTCGC-TTATACTTATAGCATCTTCTCGGGCATGCTCGTTGTTTTTATCATCAGAAGCTC 2093
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2106 TCC-CATTATACTTATAGCATCTTCTCGGGCATGCTCGTTGTTTTTATCATCAGAAGCTC 2164
Query 2094 TCTGCCCGTTACTACCAATTTTTTGGACGCATGCAGAAGAATGAAAGAGGATGATTGATC 2153
||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||
Sbjct 2165 TCTGCCCGTTACTACCAATTTTTTGGACGCA-G-A-A-GAATGAAAGAGGATGATTGATC 2220
Query 2154 GATCCAAGTTGGTTTGATTGTACCATTTACATATAATGTCTTTGTAATGTTTAACG-TTA 2212
||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 2221 GATCCAAGTTGGTTTGATTGTACCATTTACATAGAATGCCTTTGTAATGTTTAACTCTTC 2280
Query 2213 TATATACATAAGTGGTTTTATACTCTCCCAATCACGGCTAATTTTAGCTAGCAAACCTTA 2272
|||||||||| ||||||||||||||| ||||||| |||||||| ||||| |||||||||
Sbjct 2281 -ATATACATAAATGGTTTTATACTCTCTCAATCACAGCTAATTTGAGCTAACAAACCTTA 2339
Query 2273 GAGTCtatttttattttatttatttattCAAAGTAGTTTGGTTT-TGTTGGTATGTTATA 2331
|||||| |||||||||| |||||||||||||||||||||| ||| ||||||||| |||||
Sbjct 2340 GAGTCTGTTTTTATTTTGTTTATTTATTCAAAGTAGTTTG-TTTATGTTGGTATATTATA 2398
Query 2332 AAATTATGAAAGCAGAATCTTCGTGTTGC 2360
|| |||||||||||||| |||||||||||
Sbjct 2399 AATTTATGAAAGCAGAACCTTCGTGTTGC 2427
Score = 826 bits (447), Expect = 0.0
Identities = 467/477 (98%), Gaps = 0/477 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATTCCTCGCCGGACCTTTGTTTtcttcttctctctttgtctcttgtcgtcaacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 ATGGAGATTCCTCGCCGGACCTTTGTTTTCTTCTTCTCTCTTTGTCTCTTGTCGTCAACG 338
Query 61 tctctctcCATCGATAATTTTCACCAAGCTTTTCCTATTGTTGAACCTGCTCCAGGTCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 339 TCTCTCTCCATCGATAATTTTCACCAAGCTTTTCCTATTGTTGAACCTGCTCCGGGTCAT 398
Query 121 ACAAAGCTTCAGCTTAGTAGAGAAGGTTTGGAAGCAATTAGCAGAATTACAACTCCTATT 180
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 399 ACAAAGCTTCAGCTTAGCAGAGAAGGTCTGGAAGCAATTAGCAGAATTACAACTCCTATT 458
Query 181 TCTGCTGTTGCGGTGATTGGCCCATATAGGTCTGGAAAATCATTTCTACTCAATCAGCTT 240
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 459 TCTGCTGTTGCGGTGATTGGCCCATATCGTTCTGGAAAATCATTTCTACTCAATCAGCTT 518
Query 241 CTTTCTCTTTCCTGTTATGAAGGTTTTGGTGTTGGACATATGCGTGATACCAAAACAAAA 300
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 519 CTTTCTCTTTCTTGTTATGAAGGTTTTGGTGTTGGACACATGCGTGATACCAAAACAAAA 578
Query 301 GGTATTTGGGTCTGGGGAACACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GGTATTTGGGTCTGGGGAACACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTA 638
Query 361 ATTTACCTCGACACTGAAGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGG 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 ATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGG 698
Query 421 ATTTTTGCTCTGGCAACGGTTATGAGTTCTGTTCTTATCTATAATCTGCCTGAAACT 477
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 699 ATTTTTGCCCTGGCAACGGTTATGAGTTCTGTGCTTATCTATAATCTGCCTGAAACT 755
Score = 132 bits (71), Expect = 2e-29
Identities = 131/155 (85%), Gaps = 23/155 (15%)
Strand=Plus/Plus
Query 610 ATCCGTGAAGCTGATATTTCTCGGCTCTCCTTTGCTGTTGAG-TTGGCAGAAGAATTTTA 668
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 756 ATCCGTGAAGCTGATATTTCTCGGCTCTCCTTTGCTGTTGAGCTTG-CGGAAGAATTTTA 814
Query 669 TGGAAGAGTAAAGGTACACCCTAACGAAATTGCTGGTGAAGATGTTGCTTTTGAACCGTC 728
|||||||||||||| | | | ||||||||||||||||||||||
Sbjct 815 TGGAAGAGTAAAGG-----------G---T-G------AAGATGTTGCTTTTGAACCGTC 853
Query 729 AAAGCTTCTGTGGCTTATCCAGCGTGATTTTCTGC 763
|||||||||||||||||||||||||||||||||||
Sbjct 854 AAAGCTTCTGTGGCTTATCCAGCGTGATTTTCTGC 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117168072030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5