BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482901
Length=1334
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38860.2 | Symbols: YLS5 | Class I glutamine amidotransferas... 2141 0.0
> AT2G38860.2 | Symbols: YLS5 | Class I glutamine amidotransferase-like
superfamily protein | chr2:16233315-16235234 REVERSE
LENGTH=1538
Length=1538
Score = 2141 bits (1159), Expect = 0.0
Identities = 1280/1338 (96%), Gaps = 9/1338 (1%)
Strand=Plus/Plus
Query 1 TTCAATACACACAAACATTTA-CCAAAATGGCATCGGCGGTTCAGAAATCGGCGTTGCTC 59
|||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1 TTCAATGCACACAAACATTTACCCAAAATGGCATCGGCGGTTCAGAAATCAGCGTTGCTC 60
Query 60 TTATGTGGAGACTACATGGAAGCCTATGAAACGATTGTTCCTCTCTATGTTCTCCAATCG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATGTGGAGACTACATGGAAGCCTATGAAACGATTGTTCCTCTCTATGTTCTCCAATCG 120
Query 120 TTTGGCGTTAGCGTTCATTGCGTTTCACCCAACCGCACCGCCGGTGATCGCTGCGTTATG 179
||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 121 TTTGGGGTTAGCGTTCATTGCGTTTCACCCAACCGCAACGCCGGCGATCGCTGCGTTATG 180
Query 180 TCTGCCCACGATTTCTTGGGCCTCGAGCTATACACCGAGCTTGTAGTTGACCAGTTGACT 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TCTGCCCACGATTTCTTGGGCCTCGAGCTATACACCGAGCTTGTCGTTGACCAGTTGACT 240
Query 240 TTAAACGCCAATTTCGATGACGTCACTCCGGAGAATTACGACGTCATCATCATCCCAGGA 299
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAAACGCAAACTTCGATGACGTCACTCCGGAGAATTACGACGTCATCATCATCCCAGGA 300
Query 300 GGACGATTCACGGAGCTTCTCAGCGCCGACGAGAAATGCGTCGACCTCGTGGCGCGATTC 359
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 GGCCGATTCACGGAGCTTCTCAGCGCCGACGAGAAATGCGTTGACCTCGTGGCGCGATTC 360
Query 360 GCCGAATCCAAGAAGCTCATCTTCACTAGCTGCCACAGCCAGGTTATGCTTATGGCTGCC 419
||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |||
Sbjct 361 GCCGAATCCAAGAAGCTGATCTTCACTAGCTGTCATAGCCAGGTTATGCTGATGGCGGCC 420
Query 420 GGAATTCTCGCCGGTGGTGTGAAATGCACGGCGTTTGAAAGCATAAAGCCTCTGATCGAA 479
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 GGAATCCTCGCCGGTGGTGTGAAATGCACGGCGTTTGAAAGCATAAAGCCTTTGATCGAA 480
Query 480 CTCTCCGGCGGCGAGTGGTGGCAACAGCCTGGGATTCAGAGCATGTTCGAGATCACCGAT 539
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTCCGGCGGTGAGTGGTGGCAACAGCCTGGGATTCAGAGCATGTTCGAGATCACCGAT 540
Query 540 TGCGTTAAAGACGGGAATTTCGTGAGTATGGTTGGTTGGCCAACGCTTGGTCACGGTATT 599
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||
Sbjct 541 TGCGTTAAAGACGGGAATTTCATGAGTACGGTTGGTTGGCCAACGCTTGGTCACGGCATT 600
Query 600 AAGGTTTTGCTCGAATCTCTTGGTGCCAAAGTCTCG-AGCTTGAAGAAGAATCAAGCTTC 658
||| ||||||| ||||||||||||| |||||||| | |||||| ||||||| ||||||||
Sbjct 601 AAGCTTTTGCTTGAATCTCTTGGTGGCAAAGTCT-GTAGCTTGGAGAAGAAGCAAGCTTC 659
Query 659 TGTGCTTTTCCTAATTGGGGACTATGTAGAAGATTATGGGATCAATGTACCATTTAGAGC 718
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TGTGCTTTTCCTCATTGGGGACTATGTAGAAGATTATGGGATCAATGTACCGTTTAGAGC 719
Query 719 ACTACAAGCTTTAGGATGTAAAGTGGATGCAGTGACACCGAATAAGAAGAAGGGAGAAGT 778
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 720 ACTACAAGCTTTAGGTTGTAAAGTGGATGCTGTGACACCGAACAAGAAGAAGGGAGAAGT 779
Query 779 GTGTGCAACGGCGGTTTATGACCTCGAGGAAGGACGGCAGATTCCTGCAGAGAAGCGTGG 838
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 780 GTGTGCAACGGCGGTTTATGACCTTGAGGATGGACGGCAGATTCCTGCAGAGAAGCGTGG 839
Query 839 ACATAACTTCTTTGTGACTGCATCGTGGGATGATATATGTGTGGATGATTATGATTGTGT 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 ACATAACTTCTTTGTGACTGCATCGTGGGATGATATATGTGTGGATGATTATGACTGTGT 899
Query 899 GGTGGTTCCAGGTGGGAGATCACCTGAGCTATTGGTGATGAATGAAAAGGCTGTTGCTTT 958
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGTGGTTCCAGGAGGGAGATCACCTGAGCTATTGGTGATGAATGAAAAGGCTGTTGCTTT 959
Query 959 GGTTAATAAGTTT-GCAGAGAAAGATAAGGTTTTTGCAGCTATTGGACAGGGGAAATTGC 1017
|||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 960 GGTTAAGA-GTTTTGCAGAGAAAGATAAGGTGTTTGCAGCTATTGGACAGGGGAAATTGC 1018
Query 1018 TTCTTGCAGCCACTGGTTTTCTTAAGGGGAAGCGATGCGCGAGTGGGAAAGGGATGAAGG 1077
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTCTTGCAGCCACTGGTGTTCTTAAGGGGAAGCGATGCGCGAGTGGGAAAGGGATGAAGG 1078
Query 1078 TGATGGTGAAGGTGGCTGGCGGTGAGGCTGTGATGGGAAAGGGATGCGTAACTGATGGGA 1137
||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||
Sbjct 1079 TGATGGTGAAGGTGGCTGGAGGTGAGGCTGTGATGGAAAAGGGATGTGTAACTGATGGGA 1138
Query 1138 AGCTTGTGACGGCTGCATCAGCCACGGATCTGCCTGCCTTTTTGTCTGATTTATCAACTG 1197
|| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1139 AGGTTGTGACGGCAGCATCAGCCACGGATCTGCCTGCCTTTTTGTTTGATTTATCAACTG 1198
Query 1198 CTCTTGGTCTCACTGTCATGTTCTAAGATTTTGCAACCAAAAA-CATAAAAAAGATAGTT 1256
|||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 1199 CTCTTGGTCTAACTGTCATGTTCTAAGATTTTGCAACTAAAAAACATAAAA--GATAGTT 1256
Query 1257 TGAGTAATAAAATCATATCTTCAATTTGCTCAATTGAAGTGAAAAGGAAAAACAAAAGAG 1316
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1257 TGAGTAATAAAATCATATCTTCAATTTGCTCAATTGAAGTGAAAAG-AAAAACAAAAGAG 1315
Query 1317 CTCTATTGTAGTCTCTCT 1334
||| |||||||| |||||
Sbjct 1316 CTCGATTGTAGTGTCTCT 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65662312860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5