BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482903
Length=520
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38870.1 | Symbols: | Serine protease inhibitor, potato inh... 621 2e-177
> AT2G38870.1 | Symbols: | Serine protease inhibitor, potato inhibitor
I-type family protein | chr2:16236381-16237280 REVERSE
LENGTH=608
Length=608
Score = 621 bits (336), Expect = 2e-177
Identities = 471/530 (89%), Gaps = 34/530 (6%)
Strand=Plus/Plus
Query 1 AAAACCATAAGTGTCAAAGCTTTTACCAAACAAATTAATAATGTCAAGGGAGGGG--A-T 57
|||| || ||||||||||||||||||||||||||||||||||||||| | ||||| | |
Sbjct 3 AAAATCAGAAGTGTCAAAGCTTTTACCAAACAAATTAATAATGTCAACGAAGGGGCTATT 62
Query 58 -----C--G---C--CAAAGTTTGACTTTTGAATCTGCAACCTCATCGACGACACCGACA 105
| | | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 63 AAAAGCTGGTTTCGTCAAAGTTTGACTTTTGAATCTGCAACCTCACCGACGACACCGACA 122
Query 106 CCAAG-C----C---C-TATCCGATTCTATATAAATGGGACTAAAATCCCTAAAGATGAG 156
||||| | | | |||||||||| ||||||||||||| ||||| |||||| ||||
Sbjct 123 CCAAGACGTAACGTACGTATCCGATTC--TATAAATGGGACTCAAATCTCTAAAGGTGAG 180
Query 157 CATACAAATACATCA-CA-ACTACATAAATATATACAAGAGGGAAGAAAAATGTCGTCCG 214
||||||||||||||| | |||||||||||||||||||||| |||||||||||||| |||
Sbjct 181 CATACAAATACATCAGAAGACTACATAAATATATACAAGAGTGAAGAAAAATGTCGACCG 240
Query 215 AATGTCCTAGGAAGAACTCGTGGCCGGAACTTAGGGGAACAAATGGTGACTATGCGGCGG 274
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
Sbjct 241 AATGTCCTAGGAAGAACTCGTGGCCGGAGCTTACGGGAACAAATGGTGACTATGCGGCCG 300
Query 275 CGGTGATAGAGAGAGAGAACCCAACCGTCGATGCTGTCGTGATTTTGGATGGGAGTCCGG 334
||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||
Sbjct 301 TGGTGATAGAGAGAGAGAACCCCACCGTCAATGCTGCCGTGATTTTGGATGGGAGTCCGG 360
Query 335 TGACCGCAGACTTCAGGTGCGACCGGGTCAGGGTTTTTGTTGATAGAAACCGTATCGTCG 394
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 361 TGACCGCAGACTTCAGGTGCGACCGGGTCAGAGTTTTTGTTGATGGAAACCGTATCGTCG 420
Query 395 TCAAAACCCCTACATCCGGCTAGACTTGTATAATTTCTATATGCATTAAAT-AAGAAAGC 453
|||||||||| | ||||||||||||||||||||||||||||| ||| || | || |||||
Sbjct 421 TCAAAACCCCCAAATCCGGCTAGACTTGTATAATTTCTATATTCAT-AA-TGAA-AAAGC 477
Query 454 TATAGACGA-TGCGTGGTTGGTTAGTAATCAGTCATGTAAAATAATTATC 502
||||||||| | ||||||||||||||||||| |||||||||||||| |||
Sbjct 478 TATAGACGAGT-CGTGGTTGGTTAGTAATCAATCATGTAAAATAATAATC 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24865902765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5