BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482910
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38890.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1018 0.0
> AT2G38890.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown. | chr2:16241189-16242917
FORWARD LENGTH=1067
Length=1067
Score = 1018 bits (551), Expect = 0.0
Identities = 724/803 (90%), Gaps = 30/803 (4%)
Strand=Plus/Plus
Query 1 AAAGAGAGTAAAAGGAATCATCGCAAAAGCTTGGCCTGGGACACTGCTTTTTTCACCAAC 60
|||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 55 AAAGAGAGCAAATGGAACCATCGCAAAAGCTTGGCCTGGGACACTGCTTTTTCCACCAAC 114
Query 61 CCTGGAGTGTTAGATCCTGAAGAATTATTTGGGAGCTTAAAGATTGACGAGAATGAGACT 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 115 CCTGGAGTGTTAGATCCTGAAGAATTGTTTGGGAGCTTAAAGATTGACGAGAATGAGATT 174
Query 121 GATGTTGAAGTAAATCATAAGCACACAATCAAGACACTTCCTTCGGAAACCGATGCTCGT 180
|| ||||||||||||||| |||| | |||||||||||| ||||||||||||||
Sbjct 175 GAAGTTGAAGTAAATCAT--------AATC-ACACACTTCCTTCGAAAACCGATGCTCGT 225
Query 181 CCAAGTTTTGCTTGGGACAATGCtttttttACCGATCCAGGTGTTCTTGATGCTGAGGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 CCAAGTTTTGCTTGGGACAATGCTTTTTTTACCGATCCAGGTGTTCTTGATGCTGAGGAG 285
Query 241 TTGTCTCTTATGAACAATGGCTTCACCAGTAACACAAAGCTTCGTAAGTCTGCAGATTCG 300
|||| |||| |||||||||| |||||||||||||| |||||||||||||||| | |
Sbjct 286 TTGTGTCTTGTGAACAATGGTTTCACCAGTAACACGCAGCTTCGTAAGTCTGC---T--G 340
Query 301 ATGACGACGACAACTCAAGGAAGCAGATTTTCTGTAGCGAGCATTGAATTTGATCTGTTT 360
|| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 341 AT-ACGACGACAACTCAAGGAAGCAGATTTTCTGTGGCCAGCATTGAGTTTGATCTGTTC 399
Query 361 CACGAGTTGAGAGCCTCTTTACGTAATTCACCGAATGTGAAGCAGACAGTGACTCGAGAG 420
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 400 CACGACCTGAGAGCCTCTTTACGTAATTCACCGAATGTGAAGCAGACAGTAACTCAAGAG 459
Query 421 AGCCAGCGTAAGTTACCAGATGGTAAAAAGAGGACTAAAGGGTCCAAACAGAAAGATCAA 480
| ||| ||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||
Sbjct 460 ACCCATCGTAAGTTACCAGATGGTATAAAGAGGACTAAAGGATACAAACAGAAAGTTCAA 519
Query 481 CCTTTGAGTCTCATTCCTCAACCAAAAGTGtcttcttcttcttcttcttctt---cATT- 536
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 520 CCTTTGAGTCTCATTCCTCAACCAAAAGTGTCTTCTTCTTCTTCTTCTTCTTTTTCTTTA 579
Query 537 -CA-CCATCTCCAAACCTTTGACTCCTTGTCAAGCTACCCGCGAGAAGAAATGTGTTGCG 594
|| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 580 TCATCCATCTCCAAATCTTTGACTCCTAGTCAAGCTATACGCGAGAAGAAATGTGTTGCA 639
Query 595 AGTGAACTCG-GAAAAACTAGGGGAAAACACAAGAATCATGGGTTTGAAGAACAATCTGG 653
|||||||||| || || || || |||||||||||||||||| |||||||||||||||||
Sbjct 640 AGTGAACTCGAGAGGAA-TAAGGAAAAACACAAGAATCATGGTTTTGAAGAACAATCTGG 698
Query 654 ATC-AAAGTCTAACATAAGGTCATCTTATTCAAGTTACGCATTCAAGGATTTGACATCAT 712
||| ||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 699 ATCGAAA-TCTAACATAAGGTCATCGTATTCAAGTTACGCAGTCAAGGACTTGACATCAT 757
Query 713 CCTCCTCTGGTCTGAGGTTACCACTTCCAAAGATGAGTTTTTTCGACTCGGAGAACGGAG 772
||| ||||||||||||||||||||||||||||||| | |||||||||||| | ||| ||
Sbjct 758 CCTACTCTGGTCTGAGGTTACCACTTCCAAAGATGGGATTTTTCGACTCGCA-AACAGA- 815
Query 773 AGAAAGAAAACAGAGAA-CCAAA 794
|||| ||| ||| | || |||||
Sbjct 816 AGAA-GAAGACACA-AATCCAAA 836
Score = 134 bits (72), Expect = 2e-30
Identities = 90/98 (92%), Gaps = 3/98 (3%)
Strand=Plus/Plus
Query 805 GCAAACAGAAGAAGAAGACACAATTCCAAACTTGAGACTTCTTCTTCTACACCAGAAAAC 864
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 807 GCAAACAGAAGAAGAAGACACAAATCCAAACTTGAGA---CTTCTTCTACACCAGAAAAC 863
Query 865 CGCAGCATTCTGGGGCAACGCAAGATGCGAAAGTGAAA 902
|||||||||||||| |||||||| | |||||||||||
Sbjct 864 CGCAGCATTCTGGGACAACGCAAAACACGAAAGTGAAA 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5