BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482911

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38905.1 | Symbols:  | Low temperature and salt responsive p...   399    5e-111


> AT2G38905.1 | Symbols:  | Low temperature and salt responsive 
protein family | chr2:16244099-16244503 REVERSE LENGTH=315
Length=315

 Score =  399 bits (216),  Expect = 5e-111
 Identities = 240/251 (96%), Gaps = 3/251 (1%)
 Strand=Plus/Plus

Query  1    TCTCTTTCTCTTCTTCTCCAAAACATCAACAATGGGATCAGAAACTTTCTTAGAAATTAT  60
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct  1    TCTGTTTCTCTTCTTCTCCAAAACATCAAAAATGGGATCAGAAACTTTCTTGGAAATTAT  60

Query  61   TCTGGCGATTCTTCTACCTCCCGTCGGCGTTTTCCTCCGATATGGTTGTGGGGTAGAGTT  120
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  61   TCTGGCGATTCTTCTACCTCCCGTCGGCGTTTTCCTTCGATATGGTTGTGGGGTAGAGTT  120

Query  121  CTGGATCTGTCTGTTGTTGACGATACTGGGTTACATTCCTGGGATCATCTATGCTATCTA  180
            |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  121  CTGGATCTGTCTCTTGTTGACGATACTGGGTTACATCCCTGGGATCATCTATGCTATCTA  180

Query  181  CGTTCTTGTTGGATGATGACCAAATTCTCTTCTTGTAAATTTTTCATAATCTTTATCTAG  240
            ||||||||| |||||||||||||||||||||   |||||||||||||||||||||| |||
Sbjct  181  CGTTCTTGTCGGATGATGACCAAATTCTCTT---GTAAATTTTTCATAATCTTTATTTAG  237

Query  241  CCTTTGTTGTT  251
            |||||||||||
Sbjct  238  CCTTTGTTGTT  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13220417987


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5