BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482914
Length=2378
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38950.1 | Symbols: | Transcription factor jumonji (jmj) fa... 3446 0.0
> AT2G38950.1 | Symbols: | Transcription factor jumonji (jmj)
family protein / zinc finger (C5HC2 type) family protein | chr2:16260853-16265219
FORWARD LENGTH=2482
Length=2482
Score = 3446 bits (1866), Expect = 0.0
Identities = 2195/2355 (93%), Gaps = 18/2355 (1%)
Strand=Plus/Plus
Query 28 TGAATGTGTAATGTTCTCATAAGTCATCGGATCTCACTTCGTCCGGGAAGTTGCATCTAT 87
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 52 TGAATGTGTAATG-TCTCATAAGTCTTCGGATCTCACTTCGTCCGGGAAGTTGCATCTTT 110
Query 88 ATTGATCTCATCTGAAGTTCAATTTATTTCCTCTTCGGGAAAAT-AATCCTTTTGGTGGC 146
||||| |||||||||||||||||||||||| ||||| || |||| |||||||||||||||
Sbjct 111 ATTGACCTCATCTGAAGTTCAATTTATTTCGTCTTCCGG-AAATCAATCCTTTTGGTGGC 169
Query 147 TGTAAGGTTTAATGGGCATTGAAGGTGTGCCTACGTATTCAAAATCTGGAAATATGGACA 206
|||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 170 TGTAAGGTTTAATGGGCATTGAAGGTGTATCAACGTATTTGAAATCTGGAAATATGGACA 229
Query 207 TAATTTCAACTCCGCCAGGTTTTGTATCTCAAACATCGTTTGTGCTGAGGAATGTACGTC 266
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 230 CAATTTCTGCTCCGCCAGGTTTTGTATCTCAAACATCGTTTGTGCTGAGGAATGTACCCC 289
Query 267 GAGACAAAGAAAGTTCCAGGTCGGTGTCGACACAAGAGCAGACAACTGGATTCGGCACAG 326
|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 290 GAGACAAAGAAAGTCCCAGGTCCGTGTCGAGACAAGAGCAGACAACTGGATTCGGCACAG 349
Query 327 ATGGTGAAGATAGTTGCAATATGTTTCTTACAAA-CCGACCGTGGATAGTGCATGGTCAC 385
||| | |||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 350 ATGATAAAGATAGTTGCAATATGTTTCTTA-AAAGCCGACCGTGGATAGTGCATGGTCAC 408
Query 386 ACAATTCCCAGCTTAGAGGCCTTAAGGCCGAGAAAAACTGAGGTACGGAGAAGACGGCCC 445
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 409 ACAATTCCCAGCTCAGAGGCCTTAAGGCCGAAAAAAACTGAGGTACGGAGAAGACGGCCC 468
Query 446 CTCAAAGTGTCTGAGACCGAAGTCCTTGAGGAAGCTCCTGTGTTCAACCCAACCGAAGAG 505
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CTCAAAGTGTCTGAGACCAAAGTCCTTGAGGAAGCTCCTGTGTTCAACCCAACCGAAGAG 528
Query 506 GAATTCAGTGACACACTTTCATATATATCAAGCTTGCGTGACAGAGCTGAGCCGTATGGA 565
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GAATTCAGGGACACACTCTCATATATATCAAGCTTGCGTGACAGAGCTGAGCCGTATGGA 588
Query 566 ATCTGTTGTGTTGTTCCTCCACCTTCATGGAAACCTCCATGTCTTCTCAAGGAGaaaaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 589 ATCTGTTGTGTTGTTCCTCCACCTTCATGGAAACCTCCATGTCTTCTCAAGGAGAAACAA 648
Query 626 aTATGGGAGGCTTCTACATTTTTCCCTCAAGTTCAGCTCTTTGGAAGTCATACCGAGAAC 685
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 649 ATATGGGAGGCTTCTACATTTTTCCCTCAAGTTCAGCTCTTTGGAATTCAGACCGAGAAC 708
Query 686 CCAAAGATTAAAAAGGCGGCTGATGCGGATAGTGATGATGCTGCACCTGA-GGAAGTTCA 744
| |||||||||||||| || |||||| |||||| ||||||||||| |||| || |||||
Sbjct 709 CGAAAGATTAAAAAGGAGGTTGATGCAGATAGTAATGATGCTGCATCTGAAGGG-GTTCA 767
Query 745 GTTTTGTAGAATAGAACGTGGTCCTGGGTATACTTTGGAGACCTTTAAAGTCTTTGCAGA 804
||| |||||| |||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 768 GTTATGTAGAGTAGAACGTGGTCCTGGGTATACTTTGAAGTCCTTTAAAAACTTTGCAGA 827
Query 805 TTCATACAAGAAGAGACATTTTAGCACGAAGGATGAGGTTCTGGGTCCAGAGAACTCATC 864
| ||||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||||
Sbjct 828 TACATACAAGAAGAGTCATTTTGGCATGAAGGATGAGGTTTTGGGTTCAGAGAACTCATC 887
Query 865 TACATCACTTAAACCAGAGGAGCTTACTGTGGCAGAAATTGAAAAAGAGTATAGACAACT 924
| |||||||||||||| | ||||| | ||||||||| |||||||||||||| |||||| |
Sbjct 888 TCCATCACTTAAACCAAATGAGCTAATTGTGGCAGACATTGAAAAAGAGTACAGACAAAT 947
Query 925 TGTTGAGAGTCCACTTGTTGAAATTGGGGTGCTTTATGGCAATGATCTAGACACCACAAC 984
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 948 TGTTGAGAGTCCACTTATTGAAATTGGGGTGCTTTATGGCAATGATTTAGACACTGCAAC 1007
Query 985 GTTTGGAAGTGGATTTCCCTTATCTGCACCATCTGAGTCTTGCAAGTACCCATCAGGTTG 1044
|||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||
Sbjct 1008 GTTTGGAAGTGGATTTCCCTTATCTGCACCATCTGAATCTAGCAAATATTCATCAGGTTG 1067
Query 1045 GAATCTGAATAGTACGGCTAAGCTTCCTGGTTCTCTTCTATCATTAGAAGACTGTGAATC 1104
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1068 GAATCTGAACAGTACGGCTAAGCTTCCTGGTTCTCTTCTATCATTAGAAGACTGCGAATC 1127
Query 1105 TA-TTTGTGTTCCTCGCCTAAGTGTAGGAATGTGCTTGTCTTCCCAGTTCTGGAAATCTG 1163
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 -AGTTTGTGTTCCTCGTCTAAGTGTAGGAATGTGCTTGTCTTCCCAGTTCTGGAAATCTG 1186
Query 1164 AGAAGGAGAGACTCTACTCTCTCTGCTATTTGCATGTGGGCGGTGCTCCTAGAGTGTGGT 1223
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1187 AGAAGGAGAGACTCTACTCTCTCTGCTATTTGCATGTGGGCG---CTCCTAGAGTGTGGT 1243
Query 1224 ATTCTGTAGCGGGATGTCATCGATCAAAGTTTACGGCTGCCATGAAGAGCTTAATCCCTG 1283
|||| ||||| |||||||||||||||||||||| |||||||||||| ||||| |||| ||
Sbjct 1244 ATTCCGTAGCAGGATGTCATCGATCAAAGTTTAAGGCTGCCATGAAAAGCTTCATCCTTG 1303
Query 1284 AGATGTCAGGAGAACAACCAAAGAAGAATCATAACTTCGATGTGATGATAATGTCTGCTT 1343
|||||||||||||||| |||||||||| |||||| | | ||||||||| |||||| | |
Sbjct 1304 AGATGTCAGGAGAACAGCCAAAGAAGAGTCATAA-TCC--TGTGATGATGATGTCTCCAT 1360
Query 1344 ATCAATTGAGCATGGAGGGTATACCAGTGACCCGCTGTGTCCAGAACCCTGGCCAGTATG 1403
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1361 ATCAATTGAGCGTGGAGGGTATACCAGTGACCCGCTGTGTCCAGCACCCTGGCCAGTATG 1420
Query 1404 TTATTATATTTCCAGGCTCGTATTACTCTGCCTTTGACTGTGGCTTCAACTGTTTGGAGA 1463
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TTATTATATTTCCAGGGTCGTATTACTCTGCCTTTGACTGTGGCTTCAACTGTTTGGAGA 1480
Query 1464 AAGCAAATTTTGCTCCACTTGATTGGTTGCCGCATGGGGATATTGCTGTTCAGCTGAATC 1523
||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1481 AAGCAAACTTTGCTCCCCTTGATTGGTTGCCCCATGGGGATATTGCTGTTCAGGTGAATC 1540
Query 1524 AAGAGAAGAGTAAAAAGTCGTTAATTTCGTACGATAAGCTATTATTAAGTGCTGCAAGGG 1583
|||||| |||||||| |||| | || ||||| |||||||||||||| |||||||||||||
Sbjct 1541 AAGAGATGAGTAAAACGTCGCTGATATCGTATGATAAGCTATTATTTAGTGCTGCAAGGG 1600
Query 1584 AAGCTGTGAAATGTCTTAAGGAATATGCTTTGTCCAAGAAAAACACAGCATGTTACACGA 1643
||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1601 AAGCTGTAAAATGTCTTAAGGAATATGGGTTGTCGAAGAAAAACACAGCATGTTACACGA 1660
Query 1644 GATGGAATGATTCTTGTGGGACAGATGGGTTATTCTCCAACATAGTCAAGTCACGGATCA 1703
|||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 1661 GATGGAATGATTCTTGTGGGACGGATGGGTTGTTCTCCAACATAATCAAGTCACGGATCA 1720
Query 1704 AGCAGGAGAAAAACAGACGTGAATTTCTTAGCAATACACTAGAATCGCAAAGGATGGACA 1763
| | ||||||||| |||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1721 AACTGGAGAAAAATAGACGTGAATTTCTTATCAGTTCACTAGAATCGCAAAGGATGGACA 1780
Query 1764 AGAGTTATGATGCTGTGAGCAAAAGAGAATGCTGTGTATGTCTTGGGGATTTGTATCTTT 1823
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1781 AGAGTTATGATGCTGTGAACAAAAGGGAATGCTGTGTATGTCTTGGGGATTTGTATCTTT 1840
Query 1824 CCGCTGTTAAATGTTCATGCTCAGCTGATCGTTACTCGTGTCTGAGCCACATGAGGAAGC 1883
|||| ||||| ||||||||||| ||| |||||||||||||||||| ||||||||||||||
Sbjct 1841 CCGCGGTTAACTGTTCATGCTCTGCTAATCGTTACTCGTGTCTGAACCACATGAGGAAGC 1900
Query 1884 TCTGTGCCTGTCCGAGTGACAGAAAGAGTTTTCTCTATAGGTACACTATCGAAGAGTTGA 1943
||||||| |||||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1901 TCTGTGCATGTCCGTGTGACAGAAAGAGTTTTCTCTATAGGTACACTATGGATGAGTTGA 1960
Query 1944 ATCTTCTCGTAGAAGCGTTGGAAGGTAAAAAGCTCAGCTCTATGTTCAGATGGGCAGGCA 2003
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 ATCTTCTCGTTGAAGCCCTGGAAGGTAAAAAGCTCAGCTCTATGTTCAGATGGGCAGGCA 2020
Query 2004 TAGAACAAAAATACTGTGCTTCTCCAGCCACCACAAGTTCACAACCCGAAGAAGACAAAG 2063
|||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2021 TAGATCAAAAATTCTGTGCTTCTCCAGCCACCACAAGTTCAAAACCCGAAGAAGACAAAG 2080
Query 2064 GCAAGGAAACAGATGAGGTTACACCCTGTAACATCACGAGGAAAGATGTCGCAGCTGGAA 2123
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2081 GCAAGGAAACAGATGAGGTTACACCCTGTAATATCACGAGGAAAGATGTCGCAGCTGGAA 2140
Query 2124 CTAAGGACCAGATGAGAGTGAAGGCGAGATCTATGGCTGAGATACTGAATGTTAAAGATG 2183
|||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 2141 CTAAGGACCAGACAAGAGTGAAGGCGAGATCTTTGGCTGATATACTGAATGTTAAAGATG 2200
Query 2184 GAAACAGTGATGCAAAGGAGACTTT-GAAATCCTGTTCTAAGAAATCAAACAGGCCATGC 2242
|||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 2201 GAAACAATGATGCAAAGGAGACTTTAGAA-TCTTGTTCTAAGAAATCAAACAGGCCATGC 2259
Query 2243 GATAACGATTCTTCTGAGGCCAACACGCCAAAGAAACAGAAGCAGTGATGAATCATGAAG 2302
||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2260 GATAACGATTCCTCTGAGGCCAACGCGCCAAAGAAACAGAAGCAGTGATGAATAATGAAG 2319
Query 2303 GAAAATGTAGTTTAGACATAATTTGCCAAGACAATAAAAACACTTTTATCTTCTTCTTAA 2362
|| | |||||||||| || || ||| ||||| |||||||||||||| ||||||||||||
Sbjct 2320 GAGATTGTAGTTTAGTCACAAAATGC-AAGACGATAAAAACACTTTTGTCTTCTTCTTAA 2378
Query 2363 ATCAATATATGAAGC 2377
||| |||||||||||
Sbjct 2379 ATCGATATATGAAGC 2393
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 TCACCATAACAAAATCCAGAGGCTCTGT 28
||||||||||||||||||||||||||||
Sbjct 12 TCACCATAACAAAATCCAGAGGCTCTGT 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118071681840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5