BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482919
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39000.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1563 0.0
> AT2G39000.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr2:16286339-16287970 REVERSE LENGTH=1020
Length=1020
Score = 1563 bits (846), Expect = 0.0
Identities = 945/992 (95%), Gaps = 9/992 (1%)
Strand=Plus/Plus
Query 1 ATGCGGAGCACACCGTTGGGGACGACGGCGGTTTCACCAGCTTCTATCAAGCACAACTC- 59
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 30 ATGCGGAGCACACCGTTGGGGACGACGGCGGTTTCACCAGCTTCAATCAAACACAACTCT 89
Query 60 --T---TATGGCCGCTTCGTTTCCTCTTCAGGAGTCTCTAATTTCTCTCTCCATCGTCGG 114
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 90 TATGGGTATGGCCGCTTCGTTTCCTCTTCAGGAGTCTCTAATTTCTCTATCCATCGTCGG 149
Query 115 AGACGCCACTCGTCGTTTTCTGTATCTCAAGCTCCTTCACAAATCAAATCAGGAGCATGC 174
||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||
Sbjct 150 AGACGCCACTCGTCGTTTTCTATCTCTCAAGCTCCTTCACAAATCAACTCAGGAGCTTGC 209
Query 175 AATGCTAGTCAAATAGTTGATCTTTTCCCAGCGGTTTCACCTGAAATCGTTGTTCGGGAA 234
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 210 AATGCAAGTCAAATAGTTGATCTTTTTCCAGCGGTTTCACCTGAAATCGTTGTTCGTGAA 269
Query 235 GCACGGTTAGAGGACTGCTGGGAAGTGGCAGAGACTCATTGCAGCTCTTTCTTCCCGGGA 294
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 270 GCACGGTTAGAGGACTGTTGGGAGGTGGCAGAGACTCATTGCAGCTCTTTCTTCCCGGGA 329
Query 295 TATTCGTTCCCGCTTGATGTTGTTCTGAGAGTAGATAGGTTAATGGCGATGGTAATGGGA 354
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 330 TATTCGTTCCCGCTTGATGTTGTTCTAAGAGTAGATAGGTTAATGGCAATGGTGATGGGA 389
Query 355 TTTTCTATTCCACCTGGGTGCCAGAGGACTTGTTTAGTCGCTGTGATAGGTAGTTCAGTA 414
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 390 TTTTCTATTCCACCTGGGTGCCAGAGGACTTGTTTAGTGGCTGTGATAGGTAGTTCAGTA 449
Query 415 GATGAAACCATTTGCTTTGGAAGCGAAGATTTCAAAATTGGAGCTTTTGATGCAAAGATC 474
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 450 GATGAAACCATCTGCTTTGGAAGTGATGATTTCAAAATTGGAGCTTTTGATGCAAAGATC 509
Query 475 AGCATAAACAAAGGTTATGTAGCTGGAATCTTGACTGTGGATACTGTGGCTGATTACCTT 534
||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 510 AGCTTAAACAAAGGTTATGTTGCTGGAATCTTGACTGTTGATACTGTGGCTGATTACCTT 569
Query 535 CCGAGGAAAGGACCTCTCCGCCAGAGAAGGACCGGGATCGCGTACATATCAAATGTGGCG 594
|| || ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 570 CCAAGAAAAGGACCTCTCCGCCAGAGAAGGACCGGGATCGCTTATGTATCAAATGTGGCA 629
Query 595 GTTCGAGAGAATTTCCGGCGCAAAGGAATAGCGAAGCGACTCATCTGGAAAGCAGAGGCT 654
|||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 630 GTTCGAGAGAATTTCCGGCGCAAAGGAATAGCCAAGAGACTCATATGGAAAGCAGAGGCT 689
Query 655 TTAGCCAAGAACTGGGGATGTAGAGCTATCGGCCTTCACTGTGATCTCAACAACTTAGGA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TTAGCCAAGAACTGGGGATGTAGAGCTATCGGCCTTCACTGTGATCTCAACAACTTAGGA 749
Query 715 GCCACTAAACTTTACAAAGATCAAGGTTTCAGATCCATCAAGATCCCCGAAGGAGCGACT 774
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 750 GCAACTAAACTTTACAAAGATCAAGGTTTCAGATCCATCAAGATCCCTGAAGGAGCGACT 809
Query 775 TGGCCACAACCAAAGACATCTCCTGACACCAGGTTTAACTTCATGATGAAGCTCGTGAAA 834
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct 810 TGGCCTCAACCGAAGACATCTCCTGACACCAGGTTTACCTTCATGATGAAGCTAGTG-AA 868
Query 835 CAACAACAATACACAAGCTCTTGAACAGTTTCGGTAAATCCGAGGAAAAAGGAAATTTGA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CAACAACAATACACAAGCTCTTGAACAGTTTCGGTAAATCCGAGGAAAAAGGAAATTTGA 928
Query 895 ATTCCGTTTGTTGTTGAAATA--GCTCTGATTATGTAATTGTAAATATGTTTGCAGTCTT 952
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 929 ATTCCGTTTGTTGTTGAAATATAGCTCTGATTATGTAATTGTAAATATGGTTGCAGTCTT 988
Query 953 GTGTAAATGCTATTGTCTATAATATTTCGACC 984
||||||||||||||||||||||||||||||||
Sbjct 989 GTGTAAATGCTATTGTCTATAATATTTCGACC 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5